PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01827.1.g00060.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 248aa    MW: 26503.6 Da    PI: 5.1546
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01827.1.g00060.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like414.3e-132247126
                         G2-like  1 kprlrWtpeLHerFveaveqLGGsek 26
                                    kprlrWtp+LHerFveav++LGG++ 
  Zpz_sc01827.1.g00060.1.am.mkhc 22 KPRLRWTPDLHERFVEAVTKLGGPDS 47
                                    79*********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-112050IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-82249IPR006447Myb domain, plants
PfamPF143793.3E-10118142IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MFEGMERAGC GAAAAAMGGD PKPRLRWTPD LHERFVEAVT KLGGPDSEVH AEVGSETDGD  60
ERAHLVPPKE PSSEIQDGKA EQEGFRLGSQ QRGIAAQGIN FSVPAPPSIP SSASNNTVQK  120
KLQMRIEAEG KYLQTILEKA QSNLSYDASG AANLEASRSQ LTDFNLALSC FMDNVTQVSE  180
QNSGELAKAM SADSLRTSSL GFQLCHGVQN VEAVKCPPDD GLLLLDLNIR GGHGHRSLPD  240
LKINRHTG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01827.1.g00060.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3569261e-69AK356926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042E14.
GenBankAK3660411e-69AK366041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039P18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808925.11e-100myb family transcription factor PHL11-like
TrEMBLA0A3L6RUC71e-101A0A3L6RUC7_PANMI; Myb family transcription factor APL-like
STRINGSi018049m2e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.18e-22G2-like family protein