PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01842.1.g00050.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 332aa    MW: 34790 Da    PI: 9.617
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01842.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06132157227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   kt+ C+ +     Ck G++C+FaHg+
  Zpz_sc01842.1.g00050.1.sm.mk 132 KTRMCNKYNTAEGCKWGSKCHFAHGE 157
                                   89**********************96 PP
2zf-CCCH35.12.2e-11298323127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   +kt+lC +f + G C +G+rC+FaHg+
  Zpz_sc01842.1.g00050.1.sm.mk 298 FKTKLCENFNK-GSCTFGERCHFAHGE 323
                                   69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.26891IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.3857992IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-14127162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-8129161IPR000571Zinc finger, CCCH-type
SMARTSM003560.97130157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727130158IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.72E-13199271IPR004088K Homology domain, type 1
SMARTSM003224.0E-9201271IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.103.3E-14202270IPR004088K Homology domain, type 1
PROSITE profilePS5008413.754202266IPR004088K Homology domain, type 1
PfamPF000134.2E-9204268IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.4E-16295329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.474297324IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-7297323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8297328IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-9298323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDSGRKRTAP EGANGAKRPK VTASVDAFPL GGGRALRLEL LAGWICEVMA PWFAAWPPLV  60
EIRSFAAHTV FPLCSTAGCP FGASCHFLHN FPGGYQAVAK MTNLGGPPVP SPMGRMPMGP  120
GVPDGPPTPS VKTRMCNKYN TAEGCKWGSK CHFAHGEREL GKPMPLNNSV GGPPMGPGPN  180
GHFMPPPMPV PDMVPPSTFG ASATAKISVD AFLAGGIIGK GGINTKHISR VTGAKLAIRD  240
NEADPNLKNI ELEGTFDQIK HASAMITELI VHIGGKAPQQ TKNNTGRGSH AGGPGSNFKT  300
KLCENFNKGS CTFGERCHFA HGEGELRKPA AA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01842.1.g00050.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810913.11e-156zinc finger CCCH domain-containing protein 44-like
SwissprotQ69XQ31e-145C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A3L6S1111e-161A0A3L6S111_PANMI; Zinc finger CCCH domain-containing protein 44-like isoform X1
STRINGPavir.J02805.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-41C3H family protein