PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01849.1.g00090.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SRS
Protein Properties Length: 466aa    MW: 47549.6 Da    PI: 10.4634
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01849.1.g00090.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702199.11.3e-612594192154
                          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelks 80 
                                     +sg++sC dCGnqakk+Cah+RCRtCC+srgfdC thvkstWvpa +rrerqq + aa ++  +   + a+kr+r   +
  Zpz_sc01849.1.g00090.1.sm.mkhc 259 GSGGTSCYDCGNQAKKGCAHNRCRTCCNSRGFDCDTHVKSTWVPAVRRRERQQLAGAAGASPPS--PAGAAKRPRLACQ 335
                                     57889**********************************************9999998777766..6778899999999 PP

                          DUF702  81 kkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLyd 149
                                     +++ a s+t++s+a++++++etss          lP++v+ +a+frcv+v+svddg+ e+aYq+av+i+Gh+f+G+Lyd
  Zpz_sc01849.1.g00090.1.sm.mkhc 336 TNTGANSRTSTSNATTPRSFETSSshqdasfresLPRHVRGPALFRCVQVTSVDDGQREVAYQAAVTINGHLFRGLLYD 414
                                     99999*****************9999***************************************************** PP

                          DUF702 150 qGlee 154
                                      G+e+
  Zpz_sc01849.1.g00090.1.sm.mkhc 415 LGAED 419
                                     **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.1E-55262418IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.0E-24264306IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.4E-21370416IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
METRRQRDAR TGRQGDRSRR KAGDWTANAA GMRSQKGRGM DAWNHPALSR ERKEGEARIA  60
RVTRRSSIGR PPSCDPVLCS AAATPPRASV ASSGRRFASA PDSTAVADWL PSPVGSGRGG  120
DLSLGFNAGA PAAGASSLAT GFLGSAASRH QAAAAALGYG AVNAAGDVGM VLVGPAGGSS  180
FHHQRAATAA ASPDDPMFPL VAVAQRALDA NAAKPAAPGP AIQFWQAPPP AAAADGSPGN  240
KPRAVTDYGR GRADSGGSGS GGTSCYDCGN QAKKGCAHNR CRTCCNSRGF DCDTHVKSTW  300
VPAVRRRERQ QLAGAAGASP PSPAGAAKRP RLACQTNTGA NSRTSTSNAT TPRSFETSSS  360
HQDASFRESL PRHVRGPALF RCVQVTSVDD GQREVAYQAA VTINGHLFRG LLYDLGAEDA  420
RATSAAAQLG SSDLHLGSAS ANAAPDLYSG GSGPLILGGL GYGNTP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01849.1.g00090.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806754.11e-130protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A3L6SZ111e-119A0A3L6SZ11_PANMI; Protein LATERAL ROOT PRIMORDIUM 1-like
STRINGPavir.Cb01442.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-41Lateral root primordium (LRP) protein-related