PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01861.1.g00160.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 540aa    MW: 57515.6 Da    PI: 6.4629
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01861.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS184.19.9e-571575382374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......ss 75 
                                   ++lL  cA a+++g+l +aq+lL  l elas +g++++Rlaa+ ++ALa +l+  v++ ++a    ++ e         + 
  Zpz_sc01861.1.g00160.1.am.mk 157 EQLLNPCAAAIEAGNLPRAQHLLYVLGELASFSGESNHRLAAHGLRALALHLQAAVDQAAAASVKLPSLECPstaafahV- 236
                                   689***************************************************88887765533333222211244321. PP

                          GRAS  76 eelaal....kl....fsevsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egpp 140
                                             ++    f+e+sP++ + + +aN aI + + +       +r+H++D+++s+G+Q p+Ll+aL+  p  + pp
  Zpz_sc01861.1.g00160.1.am.mk 237 -----EprvfRAalikFHEASPWFALPNALANAAIAQVATRGaaaeprRRIHVVDIGVSHGVQLPTLLDALTRVPrgSRPP 312
                                   .....12222224578********************9655433666779***********************76644889* PP

                          GRAS 141 slRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrllde 216
                                   s+ +T+ g++++       +        +L ++A+++++++ ++   a  l++l  + + +kpgE+l+V+++++l +    
  Zpz_sc01861.1.g00160.1.am.mk 313 SVHLTVAGPAATPpvpfsASPPGYDSSPQLLRYAKSIELDLAIDQ--APCLDAL--HGI-TKPGEVLVVCVQFRLSHAT-- 386
                                   ********97766899988888899999**************998..3344444..444.899**********999997.. PP

                          GRAS 217 svsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleakl.preseerikvErellgreiv 295
                                       ++e+ +vL+ + +l+P++vv++e + d   ++s   +f+  le  +++++s++a + +r++eer+++E+e  g +  
  Zpz_sc01861.1.g00160.1.am.mk 387 ----ADEQAAVLRSIMNLNPELVVLTELDGDGrRNGSVSSEFAARLELLWTFMESTAAAFkGRDAEERRVMEAE-AGTA-- 460
                                   ....334579********************998999********************666515566777777777.3333.. PP

                          GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslv.lgWkdrpLvsvSa 372
                                     +++   +r +  e  e Wr+r+ +aGF +++++++a+++ak+llrk++  g+++       g++v l Wk++ + ++S 
  Zpz_sc01861.1.g00160.1.am.mk 461 --LTT--VRRGAVVEGWEAWRARMADAGFVEAAFGDEAVETAKSLLRKYD-GGWELVppsPATGAAVrLRWKGQHVSFCSL 536
                                   ..333..23446689***********************************.66787755444677777************* PP

                          GRAS 373 Wr 374
                                   Wr
  Zpz_sc01861.1.g00160.1.am.mk 537 WR 538
                                   *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.667130515IPR005202Transcription factor GRAS
PfamPF035143.4E-54157538IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MSREQDDQER TATTTSSASD WLDDSIAFLA ADLGHGSEGF GWLSTSTTAQ EQEQQHDAGN  60
FATETLPDRS VLPHTGPDPV AGYATSSAVA PSRQDRERPN KRKSPEQMAP IGESSKRPQV  120
GAEPDKAGAS SNRKPSKKGG VKGGAAGGLD RDERWAEQLL NPCAAAIEAG NLPRAQHLLY  180
VLGELASFSG ESNHRLAAHG LRALALHLQA AVDQAAAASV KLPSLECPST AAFAHVEPRV  240
FRAALIKFHE ASPWFALPNA LANAAIAQVA TRGAAAEPRR RIHVVDIGVS HGVQLPTLLD  300
ALTRVPRGSR PPSVHLTVAG PAATPPVPFS ASPPGYDSSP QLLRYAKSIE LDLAIDQAPC  360
LDALHGITKP GEVLVVCVQF RLSHATADEQ AAVLRSIMNL NPELVVLTEL DGDGRRNGSV  420
SSEFAARLEL LWTFMESTAA AFKGRDAEER RVMEAEAGTA LTTVRRGAVV EGWEAWRARM  480
ADAGFVEAAF GDEAVETAKS LLRKYDGGWE LVPPSPATGA AVRLRWKGQH VSFCSLWRPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-2515453985474Protein SHORT-ROOT
5b3h_B2e-2515453931420Protein SHORT-ROOT
5b3h_E2e-2515453931420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01861.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801770.10.0nodulation-signaling pathway 1 protein-like
TrEMBLA0A2S3H4830.0A0A2S3H483_9POAL; Uncharacterized protein
STRINGSb02g039060.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.14e-80GRAS family protein