PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01866.1.g00100.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 22477.6 Da    PI: 8.4447
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01866.1.g00100.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.22.6e-29959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    krienk+ rqvtf+kRrng+lKKA+ELSvLCdae+a++ifss+g+l+e+s+
  Zpz_sc01866.1.g00100.1.sm.mkhc  9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEIALVIFSSRGRLFEFST 59
                                    79***********************************************96 PP
2K-box80.54.1e-27861631491
                           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                                     + + +qe+ kLk ++e Lq++qR+llGe+L+sLs keL+qLe+q+e slk+iRs K++ l++q+ el++k +e+  en
  Zpz_sc01866.1.g00100.1.sm.mkhc  86 ELNNYQEYLKLKTRVEFLQTTQRNLLGEELGSLSTKELEQLENQIEISLKHIRSAKSQQLIDQLFELKHKIQETGGEN 163
                                     457899******************************************************************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.927161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-39160IPR002100Transcription factor, MADS-box
CDDcd002659.45E-42278No hitNo description
SuperFamilySSF554556.28E-32289IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.20986176IPR002487Transcription factor, K-box
PfamPF014863.1E-2187163IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEIALVIFSS RGRLFEFSTS  60
SCLYKTLERY RSCNYSSEAT APLEAELNNY QEYLKLKTRV EFLQTTQRNL LGEELGSLST  120
KELEQLENQI EISLKHIRSA KSQQLIDQLF ELKHKIQETG GENLLPMTRQ DVGPSGYANE  180
ADQELHLGIK LTWTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-20188181MEF2 CHIMERA
6byy_B6e-20188181MEF2 CHIMERA
6byy_C6e-20188181MEF2 CHIMERA
6byy_D6e-20188181MEF2 CHIMERA
6bz1_A7e-20188181MEF2 CHIMERA
6bz1_B7e-20188181MEF2 CHIMERA
6bz1_C7e-20188181MEF2 CHIMERA
6bz1_D7e-20188181MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01866.1.g00100.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6616001e-177JN661600.1 Eleusine coracana MADS5-like protein (OSM5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437883.11e-106MADS-box transcription factor 5
SwissprotA2Y9P01e-104MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB81e-104MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLC5Z4T91e-104C5Z4T9_SORBI; Uncharacterized protein
STRINGSb10g004390.11e-105(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.32e-69MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]