PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01888.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 323aa    MW: 35076.9 Da    PI: 4.1531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01888.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-19134185256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g++vAeIrdp+ +g   r++lg+++ + +Aa+a++ a+ +++g+
  Zpz_sc01888.1.g00110.1.am.mk 134 KYRGVRQRP-WGKYVAEIRDPKRRG--SRVWLGTYDLPIDAARAYDSAAFRMRGA 185
                                   8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-31133193IPR001471AP2/ERF domain
PROSITE profilePS5103223.077134192IPR001471AP2/ERF domain
SMARTSM003801.5E-34134198IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-21134193IPR016177DNA-binding domain
CDDcd000184.39E-28134193No hitNo description
PfamPF008471.1E-13134184IPR001471AP2/ERF domain
PRINTSPR003672.4E-13135146IPR001471AP2/ERF domain
PRINTSPR003672.4E-13174194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDFTGEADDF ALDFIRDLLL GNDDGFPEAS WVVSDDPSCF PVLPPPTVEP AFEPMPFSSH  60
QQQQEEEELP EWYVDMTHDH TCAAPTAAVA EGAFLVAQEP AQPVMITFES EQLSPVSSHE  120
WAASAPAPVE DFRKYRGVRQ RPWGKYVAEI RDPKRRGSRV WLGTYDLPID AARAYDSAAF  180
RMRGAKAILN FPNEVGTRGA DLLASAPSSA KQGAAAKKRK LQQVDESDVE VVAVVNKAAK  240
VDEVPSWTTS TSVSSTSSPS SISTCPATDV VSSTVTSTET MVAGDGAEEF PGTPSSWSWE  300
QSWEELLYGL SPHLALIDMA DTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-24133197468ATERF1
3gcc_A1e-24133197468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01888.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275254e-67KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140538.12e-80uncharacterized protein LOC100272603
TrEMBLB4FPJ94e-79B4FPJ9_MAIZE; Ethylene-responsive transcription factor ERF105
TrEMBLK4JFF84e-79K4JFF8_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM5G805505_P017e-80(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.17e-33ethylene responsive element binding factor 5