PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01892.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 342aa    MW: 36555.9 Da    PI: 5.3413
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01892.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.87.8e-082823152154
                                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  Zpz_sc01892.1.g00010.1.sm.mkhc 282 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 315
                                     469*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.8E-1997141IPR005540KNOX1
PfamPF037901.3E-17100140IPR005540KNOX1
SMARTSM012561.5E-26150207IPR005541KNOX2
PfamPF037911.3E-18159206IPR005541KNOX2
PROSITE profilePS5007111.92256319IPR001356Homeobox domain
SMARTSM003891.1E-10258323IPR001356Homeobox domain
SuperFamilySSF466894.28E-16259323IPR009057Homeodomain-like
CDDcd000862.72E-13259320No hitNo description
Gene3DG3DSA:1.10.10.603.5E-25263320IPR009057Homeodomain-like
PfamPF059208.9E-18276315IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAFHGHLPHE MSMPHLGTDD AAVAAAAAVA AGGGAPPAWM RYGDGSFLHL QTTSDSSAPS  60
PSAAAVQWKM GAAGEDAVAA MTGGCVVGAQ SAEADAAKSK AEILAHPLYE QLLSAHVACL  120
RIATPVDQLP RIDAQLAQSQ DVVAKYSGLA APAAAGDDGR ELDQFMTHYV LLLCSFKEQL  180
QQHVRVHAME AVMACWELEQ NLQSLTGASP GEGTGATMSD AEDDQADSEA NMYDPSLDGP  240
ADSMGFGLPT ESERSLMERR RAGKLPGDTT STLKAWWQSH SKWPYPTEED KARLVQETGL  300
QLKQINNWFI NQRKRNWHSN PSSSSNVKTK RKSSSFTVGL PI
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01892.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039182e-81AP003918.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1705_A03.
GenBankAP0053902e-81AP005390.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0075O18.
GenBankAP0149642e-81AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankD497042e-81D49704.2 Oryza sativa Japonica Group OSH45 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973169.11e-176homeobox protein knotted-1-like 13 isoform X1
SwissprotQ0J6N41e-171KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A368RKC71e-175A0A368RKC7_SETIT; Uncharacterized protein
STRINGOPUNC08G08730.11e-174(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-125KNOTTED1-like homeobox gene 3