PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01897.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 400aa MW: 43501.8 Da PI: 10.7819

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01897.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	34.8	3.7e-11	47	74	2	29
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtP 29 prlrWt +LH +Fv+ave+LGG+e P Zpz_sc01897.1.g00010.1.am.mk 47 PRLRWTADLHMAFVHAVERLGGQEMYSP 74 8**********************97666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-9	43	72	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MSRIGSSDPQ DKGVRSTRSK KGGGGKVEGS GEKRLPTVRP YNRSKLPRLR WTADLHMAFV 60 HAVERLGGQE MYSPMDFHFM RGDQRFHGMP FLQRAAALSS VSEPGGFFAS SNGGGLEVSR 120 LHGLLQHRQS QMQRFDFRSS SFRRHEWALN QREEIITRKD VLKPPSTSGP QPHHPLAPSP 180 AALRSERGWW PFTDAGAGVV AAGGEHTRAD TGNDVNFGGS SGSSSRPIPW GASGDHHLPF 240 RWRPGSGRSN VVDHVSNNIA MIKRPPDPVL IDQAPGDAQK LEWQKHVEPR PSTSRPADGA 300 CRKRLLPEAQ DLAAPDLQLS LSPTTALDAK KRKNTAAGDG QEIIYSSELS ISLSLSPPAA 360 ASIQQQHPPR EKTRGRSGGS GEAVLGQSTL DLTMSIRALE

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MSRIGSSDPQ DKGVRSTRSK KGGGGKVEGS GEKRLPTVRP YNRSKLPRLR WTADLHMAFV  60
HAVERLGGQE MYSPMDFHFM RGDQRFHGMP FLQRAAALSS VSEPGGFFAS SNGGGLEVSR  120
LHGLLQHRQS QMQRFDFRSS SFRRHEWALN QREEIITRKD VLKPPSTSGP QPHHPLAPSP  180
AALRSERGWW PFTDAGAGVV AAGGEHTRAD TGNDVNFGGS SGSSSRPIPW GASGDHHLPF  240
RWRPGSGRSN VVDHVSNNIA MIKRPPDPVL IDQAPGDAQK LEWQKHVEPR PSTSRPADGA  300
CRKRLLPEAQ DLAAPDLQLS LSPTTALDAK KRKNTAAGDG QEIIYSSELS ISLSLSPPAA  360
ASIQQQHPPR EKTRGRSGGS GEAVLGQSTL DLTMSIRALE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01897.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824409.1	1e-126	uncharacterized protein LOC112899951 isoform X1
TrEMBL	A0A1E5V647	1e-128	A0A1E5V647_9POAL; Uncharacterized protein
STRING	Si016955m	1e-122	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2754	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-12	G2-like family protein