PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01901.1.g00130.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 375aa MW: 41621.3 Da PI: 6.8521

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01901.1.g00130.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.8	7.5e-23	107	198	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevt 79 fYn+YA++ GF +r+++s++++r+g ++++fvC keg+++++ + ++k++r+r + r gC a+++v ++ +kw+vt Zpz_sc01901.1.g00130.1.sm.mk 107 FYNAYASRSGFGIRVARSRSERRKGveVLVMKRFVCLKEGHHKKKPAEpSNKKQRKRLSIRDGCPAMMEVVRRGLDKWVVT 187 9************9999886665216789*******99998878899999********************* PP FAR1 80 kleleHnHela 90 kl+leH+H ++ Zpz_sc01901.1.g00130.1.sm.mk 188 KLVLEHTHVIV 198 ******875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-21	107	198	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
METLARWIPG WGLDDATLPL AVDQMENSSS EDDELVEDYI DVEDDTGTEN VDQGTAVLAS 60 QIDCVGPSEG SMPPVGNELL MAAGVVGTND EPHVGMEFES DAAARAFYNA YASRSGFGIR 120 VARSRSERRK GVEVLVMKRF VCLKEGHHKK KPAEPSNKKQ RKRLSIRDGC PAMMEVVRRG 180 LDKWVVTKLV LEHTHVIVSA DRVREVQLRC LSGIYTRAAF ETFQVELIEA LQHYAVKVED 240 GPYTKYYVER DGDPPTRHTV FYNIAEKKAW HVLGVFILAG VITLPDSCVT KRWTKKAKTG 300 PEVIGLNHGH AKSSSDSVTS RYNDLVRDAM KCAEKGSVST GTFRVAKEVL SKAFMEIKAL 360 SEKMNRDVAQ GVDSR

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

METLARWIPG WGLDDATLPL AVDQMENSSS EDDELVEDYI DVEDDTGTEN VDQGTAVLAS  60
QIDCVGPSEG SMPPVGNELL MAAGVVGTND EPHVGMEFES DAAARAFYNA YASRSGFGIR  120
VARSRSERRK GVEVLVMKRF VCLKEGHHKK KPAEPSNKKQ RKRLSIRDGC PAMMEVVRRG  180
LDKWVVTKLV LEHTHVIVSA DRVREVQLRC LSGIYTRAAF ETFQVELIEA LQHYAVKVED  240
GPYTKYYVER DGDPPTRHTV FYNIAEKKAW HVLGVFILAG VITLPDSCVT KRWTKKAKTG  300
PEVIGLNHGH AKSSSDSVTS RYNDLVRDAM KCAEKGSVST GTFRVAKEVL SKAFMEIKAL  360
SEKMNRDVAQ GVDSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	161	KKPAEPSNKKQRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01901.1.g00130.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810978.1	1e-107	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025810979.1	1e-107	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3L6PBS6	0.0	A0A3L6PBS6_PANMI; Uncharacterized protein
STRING	Pavir.J21189.1.p	1e-109	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-15	FAR1-related sequence 3