PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01913.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 320aa    MW: 34505.6 Da    PI: 7.6611
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01913.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-2067126357
                                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                   +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Zpz_sc01913.1.g00030.1.am.mk  67 TRWCPTPEQLMVLEEMYRGgMRTPTASQIQQITAHLadygRIEGKNVFYWFQNHKARDRQ 126
                                   8*****************99*************************************996 PP
2Wus_type_Homeobox118.82.3e-3866127364
             Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                   +tRW+PtpeQ+++Lee+y+ G+rtP++++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
  Zpz_sc01913.1.g00030.1.am.mk  66 STRWCPTPEQLMVLEEMYRGGMRTPTASQIQQITAHLADYGRIEGKNVFYWFQNHKARDRQK 127
                                   79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576131No hitNo description
SMARTSM003893.0E-464131IPR001356Homeobox domain
SuperFamilySSF466897.01E-1165130IPR009057Homeodomain-like
PfamPF000464.4E-1867126IPR001356Homeobox domain
CDDcd000862.56E-567127No hitNo description
Gene3DG3DSA:1.10.10.602.6E-768126IPR009057Homeodomain-like
PROSITE profilePS5007110.10672127IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MRTRSASPHN STQPTKNHRQ TSSLLTITGS CKLIDHSRVY SREEEDDFMP SQQGGQQQQQ  60
VPTMGSTRWC PTPEQLMVLE EMYRGGMRTP TASQIQQITA HLADYGRIEG KNVFYWFQNH  120
KARDRQKLRR RLCMSHHRHL LTCSAQYYAA TATHHHHGHG FPATMPVAPA YGCGGGGVFD  180
QPAGAAGVQL LAPTSPSPAA AAAYGYYYPA ATTFAAAPTV RCAGDGGTTP PSPNQLFNYH  240
QDGGGVALAP AEALGRPEHS LGKLADNFGV STTLDDGVEI GPPGFEGSLP SPLTTALCRP  300
LKTLDLFPGG LKEEQQHDVA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01913.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401843e-86BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269463e-86KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809937.16e-86putative WUSCHEL-related homeobox 2
SwissprotA2XZR32e-59WOX2_ORYSI; Putative WUSCHEL-related homeobox 2
TrEMBLA0A1E5VXX11e-95A0A1E5VXX1_9POAL; Putative WUSCHEL-related homeobox 2
STRINGPavir.J22602.1.p5e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-39WOX family protein