PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01913.1.g00090.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 116aa    MW: 12413.1 Da    PI: 8.14
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01913.1.g00090.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000964365123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    ykC+ Cg + s ks+ + H   H
  Zpz_sc01913.1.g00090.1.sm.mkhc 43 YKCEFCGVVRSKKSLIRAHVLEH 65
                                    9**************99999985 PP
2zf-C2H226.81.2e-0889110223
                                     EETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                     +C++Cgk+F+ + +Lk+H+++H
  Zpz_sc01913.1.g00090.1.sm.mkhc  89 ECEKCGKRFKKPAHLKQHMQSH 110
                                     6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.69E-941110No hitNo description
SMARTSM003559.44365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.42488115IPR007087Zinc finger, C2H2
SMARTSM003550.001688110IPR015880Zinc finger, C2H2-like
PfamPF000965.7E-689110IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-789111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MGGRAGGPVA GGEEESGCGD GMAGTTVATA GATPAPVRDV RRYKCEFCGV VRSKKSLIRA  60
HVLEHHKDDV DGVEAYQGCG VPSKELIQEC EKCGKRFKKP AHLKQHMQSH SLETTY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01913.1.g00090.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566649.17e-34transcription factor IIIA isoform X1
TrEMBLA0A2T7E7G62e-33A0A2T7E7G6_9POAL; Uncharacterized protein
STRINGBRADI2G37790.13e-33(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17974810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.29e-19transcription factor IIIA