PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01944.1.g00040.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 233aa    MW: 25310.4 Da    PI: 9.8093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01944.1.g00040.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.3e-0682107530
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC CS
                           HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                                   h+++Er RR+ri +++  L+el+ + 
  Zpz_sc01944.1.g00040.1.sm.mk  82 HSIAERLRRERIAEWIRALQELVLNT 107
                                   99*********************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.91E-675112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.86177132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-679111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSCSLTVFGG GLMQDRYPVQ LAGLFPPVFS GAGGMQQTNL CPPPPHQVFH ARPKPGEGAM  60
AQQPPAPRQK VRARRGQATD PHSIAERLRR ERIAEWIRAL QELVLNTNKV LSMSRLGGAG  120
AVAQLVADIP LSIKGEASDG GSTQHIWEKW STDGTEKLIA KLMEEDIGAA MQFFESKALR  180
MMPISLAMDQ NPVQLASLFP LVFAGARGMQ QMNLCPPPPP PPHQVFHVQP KLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01944.1.g00040.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955662.14e-94transcription factor UNE12
SwissprotO227684e-41UNE12_ARATH; Transcription factor UNE12
TrEMBLK3ZVS39e-93K3ZVS3_SETIT; Uncharacterized protein
STRINGSi030704m2e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.39e-31bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]