PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01978.1.g00040.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 327aa    MW: 35381.4 Da    PI: 8.4688
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01978.1.g00040.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11259304655
                                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +++Er RR ri +++ +L+ l+P+     +k  + a++L +Ave+Ik Lq
  Zpz_sc01978.1.g00040.1.sm.mkhc 259 SIAERERRTRISEKLRKLQALVPNM----DKQTTTADMLDLAVEHIKGLQ 304
                                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.189253303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-15256320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-12257308No hitNo description
Gene3DG3DSA:4.10.280.105.8E-14258317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-9259304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDPPQDRGGG RSRYGYGGGS AAFPFVVDPT EGPGVRAFFP APEGSGEPPP PASTAERYGA  60
DISLGHGMHR YHQFSVEGNR ILDGGTSGSL PRHSSSPPGF FSSPVVDNSF PSARVGVGGG  120
NDVHQATSSY NKKMKSPMNL PRQGTLAQIS EDGVPNLTKK MHVIRHSEEN ITASNVARSF  180
SGGFSIGSWE DSNSIAFSNP SSKDGVNNND DFMATLSNYE LQFGVAKEAS GVDKYLQMQN  240
DQIPFRVRAK RGCATHPRSI AERERRTRIS EKLRKLQALV PNMDKQTTTA DMLDLAVEHI  300
KGLQSELQVL KEEMEKCSCR GKHPSGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01978.1.g00040.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7318802e-39AL731880.3 Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL9287572e-39AL928757.3 Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149682e-39AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825346.11e-147transcription factor bHLH129-like
TrEMBLA0A2S3I7V01e-146A0A2S3I7V0_9POAL; Uncharacterized protein
TrEMBLA0A2T7CWM61e-146A0A2T7CWM6_9POAL; Uncharacterized protein
STRINGSi010513m1e-145(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-41bHLH family protein