PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02029.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 497aa MW: 53500.3 Da PI: 7.5424

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02029.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.6e-07	247	269	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC+ f+ C++Gd C FaHg Zpz_sc02029.1.g00020.1.am.mk 247 VLCDSFQLADGCPRGDACDFAHG 269 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	5.5E-16	59	142	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	7.17E-14	59	141	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.2E-8	60	130	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.149	62	137	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	5.6	62	92	IPR002110	Ankyrin repeat
CDD	cd00204	1.92E-13	64	140	No hit	No description
PROSITE profile	PS50088	12.502	97	132	IPR002110	Ankyrin repeat
SMART	SM00248	0.0011	97	129	IPR002110	Ankyrin repeat
Gene3D	G3DSA:4.10.1000.10	1.3E-6	242	270	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-5	243	272	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.033	243	271	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.014	243	270	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	247	269	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	44	279	302	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MVDGHADHAR GAGRRERLAS LLDLAAADDA AGFRAALDAA GSEAAELVDE VELWYGRSKA 60 YEPRTPLMVA ATCGSAAVVA LLLGLGCVDV NRRPGVDGAT ALHCAASGGS PNAVAVVRLL 120 LAAGADPAIP DSAGRVPADV VHAHPASPDT LAGLEALLGR RRELSPVSAL AYTTTANGGG 180 NKKAYPVDPT LPDMSSSVYA SDEFRMFAFK VQPCARAYAH EWTECPFVHP GENARRRDPR 240 RHAYTAVLCD SFQLADGCPR GDACDFAHGV FESWLHPSRY RTRFCRDGAA CSRRICFFAH 300 AEHELRYMSR DGAGTALLSP RTMDDMAAAA TLGLQFPQSP TGGHFLQQGS KRYAAFDACL 360 EEQVDELSAL FDFASLSRSQ PRLASVRRPS AAPPLTYMAL PPSRFGNDHG ASVYTPQPAQ 420 TSQLLARIRQ QQGVRLPPVK QREMFERPFS CPTLKHHHLR SPPVTARGYS DASWINAGCP 480 GSKVDWSFNA EELHRSP

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MVDGHADHAR GAGRRERLAS LLDLAAADDA AGFRAALDAA GSEAAELVDE VELWYGRSKA  60
YEPRTPLMVA ATCGSAAVVA LLLGLGCVDV NRRPGVDGAT ALHCAASGGS PNAVAVVRLL  120
LAAGADPAIP DSAGRVPADV VHAHPASPDT LAGLEALLGR RRELSPVSAL AYTTTANGGG  180
NKKAYPVDPT LPDMSSSVYA SDEFRMFAFK VQPCARAYAH EWTECPFVHP GENARRRDPR  240
RHAYTAVLCD SFQLADGCPR GDACDFAHGV FESWLHPSRY RTRFCRDGAA CSRRICFFAH  300
AEHELRYMSR DGAGTALLSP RTMDDMAAAA TLGLQFPQSP TGGHFLQQGS KRYAAFDACL  360
EEQVDELSAL FDFASLSRSQ PRLASVRRPS AAPPLTYMAL PPSRFGNDHG ASVYTPQPAQ  420
TSQLLARIRQ QQGVRLPPVK QREMFERPFS CPTLKHHHLR SPPVTARGYS DASWINAGCP  480
GSKVDWSFNA EELHRSP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02029.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006657856.1	1e-166	PREDICTED: zinc finger CCCH domain-containing protein 50
Refseq	XP_015695270.1	1e-166	PREDICTED: zinc finger CCCH domain-containing protein 50
Swissprot	Q84SL2	1e-163	C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBL	A0A0E0ED94	1e-165	A0A0E0ED94_9ORYZ; Uncharacterized protein
STRING	OB07G24910.1	1e-165	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP823	37	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-77	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]