PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02041.1.g00130.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 261aa MW: 27062.5 Da PI: 9.0632

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02041.1.g00130.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11	0.00079	198	221	32	55
..TTS-STCHHHHHHHHHHHHHHH CS HLH 32 kapskKlsKaeiLekAveYIksLq 55 + + K++ +++LekA+ Y+k Lq Zpz_sc02041.1.g00130.1.sm.mk 198 QSIAAKVDLVTMLEKAITYVKFLQ 221 667889999**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.8E-4	200	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MAQASKRATA AASRKPQLRP VVYDDEHSSM SLELFGYHGV VVDGEHDADA GAAFPGGGMQ 60 LAFDVDNFKG GAGCGPANYY SWTVYGGGGS GARANSSSSS SVLSFEQAAA AGGTWMLIAP 120 PAVTRTVRCG SADHHAGREI QELGSVQPQA KAAQKRARPI FYANLVGSEV QAAGGKKQCG 180 GGKSKAKAAA PAPTKDPQSI AAKVDLVTML EKAITYVKFL QLQVKVLAAD EFWPAQGGKV 240 PELSQVKDAL DAILSSQHSN K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	181	GGKKQCGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02041.1.g00130.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819067.1	4e-73	transcription factor bHLH83-like
Swissprot	Q9FJ00	5e-28	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A1E5W954	6e-75	A0A1E5W954_9POAL; Transcription factor bHLH83
STRING	Sb03g008290.1	2e-72	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	2e-27	ROOT HAIR DEFECTIVE6

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]