PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02053.1.g00010.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 180aa    MW: 19513.8 Da    PI: 9.8051
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02053.1.g00010.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP39.71.2e-122275277
                                  TTT--SS--S-STTTT-------S-- CS
                           SBP 52 lsefDeekrsCrrrLakhnerrrkkq 77
                                  lsefDe+krsCr+rL++hn+rrrk+q
  Zpz_sc02053.1.g00010.1.sm.mk  2 LSEFDEGKRSCRKRLDGHNRRRRKPQ 27
                                  99**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.887126IPR004333Transcription factor, SBP-box
PfamPF031103.3E-6225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.83E-10231IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MLSEFDEGKR SCRKRLDGHN RRRRKPQLNQ FAIHPQLATR SGQNSNSMRL IDGQQAFSIS  60
FAGTFKAPKQ FPFSQEGGSI LNEFHPNNLL ARNDSHTRSS GLSGMLGPEY ALSLLSSSLH  120
RPSPAAGPAQ VTSPLACFIA TSQDATTAAA VGYASGAAHH TFAPDAMFED PSQALPFIWQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1825KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02053.1.g00010.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450775.12e-54putative squamosa promoter-binding-like protein 19 isoform X1
RefseqXP_021317606.12e-54putative squamosa promoter-binding-like protein 19 isoform X1
RefseqXP_021317607.12e-54putative squamosa promoter-binding-like protein 19 isoform X1
RefseqXP_021317608.15e-55putative squamosa promoter-binding-like protein 19 isoform X2
SwissprotQ2R3Y11e-39SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA0A0A9D3R72e-54A0A0A9D3R7_ARUDO; Uncharacterized protein
STRINGSb05g017510.19e-54(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129612532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-11SBP family protein