PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02075.1.g00050.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LSD
Protein Properties Length: 127aa    MW: 13843.9 Da    PI: 9.034
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02075.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.71.1e-092649124
                         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                                    C+gC t+L Y rGA+++RC++C t
  Zpz_sc02075.1.g00050.1.sm.mkhc 26 CNGCPTMLVYNRGATNIRCPNCRT 49
                                    **********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.9E-102451IPR005735Zinc finger, LSD1-type
PfamPF069433.4E-92649IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010530.0016291IPR005735Zinc finger, LSD1-type
PfamPF069432.2E-66589IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MPDQLYCNTF TSVNPSPARE MSELVCNGCP TMLVYNRGAT NIRCPNCRTL NSTRSGANQM  60
GQLQCGRCPT TLAYQLGAST VGCPRCRHVN PVRDARPQTV LVENPKTLDE KGKLVSNVAV  120
GVASWKR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02075.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320000.12e-60protein LOL4 isoform X3
RefseqXP_021320001.12e-60protein LOL4 isoform X3
SwissprotQ84UR06e-57LOL4_ORYSJ; Protein LOL4
TrEMBLC5YMW95e-58C5YMW9_SORBI; Uncharacterized protein
STRINGSb07g002500.18e-59(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.68e-25LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]