PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02080.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 716aa    MW: 77518.2 Da    PI: 10.6789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02080.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.7e-08163203954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Zpz_sc02080.1.g00120.1.am.mk 163 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 203
                                   699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-12159213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-13159216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-5164203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-5177208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MDFDMLMNST PEAQLELMNA MLQLEQHLTA FPDHGAMMVP STPPSPCVQQ APHPFASSVP  60
HMSAGTNGRA AYHDYQYYSQ QVTPPSSCNS SSSNRSEYTP AHQAPAAGTE GGGNGGDVAG  120
SSAMREMIFR VAALQPVNIE PEMVRPPKRR NVRISTDPQS VAARMRRERI SERIRILQRL  180
VPGGTKMDTA SMLDEAIHYV KFLKTQVQSL ERAAAASGRR PTAPPPEDNN GAVTYTSAGR  240
VNGQWTFVLA RYRAKPQLLL HDSHLRDATD GETWRRPGFR GRAPAVRLGP FLFTSYAGAQ  300
GQPLCALQPR ADCRRLAADR ASLSTVNQFR PARDRFCGRP LACARVKPLL MPRRLVSGCP  360
RATTLPSHVP GIFGARRPGH LPAPVQKSFL LPIRPLSATA AVPVCECGKF HCRVLSSPTK  420
SPAANLSCMG TLEYYTCRAI PCAKICQNTP ASDSASPCDP KELIICDVDA TPANTYKNCD  480
VLVARDARTL APHDRGGEAV ALDRTKPRRH THRDRRARGR RNVVASRLNV PGRPAAGAMH  540
HHACMHSAGK GHLSERASER WIRGSTARED RSQGTKASFR STSAQHAGDE TRHRTVPGRS  600
PSVRTWTSLV RALAVRGGPA VDDVVVSPLL AEVDVHVTLA EHASDSFACG CTAPRRGLHG  660
RRAVPTGGHM ARPARGAGGV GRSLWLTMTR VRSSDWTEGS MFVVCSSLGR LNGTGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149RPPKRR
2163168RMRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02080.1.g00120.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269731e-128KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-35bHLH family protein