PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02100.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 524aa    MW: 56924.9 Da    PI: 5.6202
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02100.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1761.1e-541112401129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknrat 78 
                                   +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL++     + e++ewyfFs +d+ky+tg+r+nrat
  Zpz_sc02100.1.g00110.1.am.mk 111 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQEhcgIGYDEQNEWYFFSYKDRKYPTGTRTNRAT 190
                                   69****************************.9***************953432234677********************** PP

                           NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                    +g+Wkatg+dk+v++ k++l+g++ktLvfykgrap+g+ktdW+mheyrle
  Zpz_sc02100.1.g00110.1.am.mk 191 MAGFWKATGRDKAVHD-KSRLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 240
                                   ****************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-57109249IPR003441NAC domain
PROSITE profilePS5100556.488111298IPR003441NAC domain
PfamPF023653.2E-28112239IPR003441NAC domain
SuperFamilySSF1019416.54E-57286298IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MVSFCAMEFL DQATERSEAV QATETHLLLV LPGFSLAILP RPVHARHAFV APLDGGDGGP  60
STLSFAGLYL YPHLSLPPAE ALPGSGVAES DAHTYSGAAP GDHMDSIESC VPPGFRFHPT  120
DEELVGYYLR KKVASQKIDL DVIRDIDLYR IEPWDLQEHC GIGYDEQNEW YFFSYKDRKY  180
PTGTRTNRAT MAGFWKATGR DKAVHDKSRL IGMRKTLVFY KGRAPNGQKT DWIMHEYRLE  240
TDENAPPQAR SLAPLLVIYL LVSGSVNVLA RAISRFTPNK LVVVLQEEGW VVCRAFKKRT  300
AYHARSMALA WDSSFAYRDP NVMVGATAAE AAAFVDPNEA YAQIRRQSSK NARFKQEAEL  360
DGAAAFLQYS SHLVELPQLE SPSAPLAPNT SHASTEEGGS GGGRRSKKAR ADKVATDWRA  420
LDKFVASQLS PGEGGDIEAT ASAAAAGEGS QLDHGCEEDM AALLFLNSDG REEVERWTGL  480
LGPASGDGDL GFSPVATCDP SLLTNFVVGP SPAGGAADLR RGRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4610823912140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02100.1.g00110.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678630.10.0NAC domain-containing protein 37 isoform X1
SwissprotQ9SL411e-116NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A368SWG20.0A0A368SWG2_SETIT; Uncharacterized protein
STRINGSi036363m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36253768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.11e-111NAC domain containing protein 76
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]