PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02139.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 180aa    MW: 19949.8 Da    PI: 10.8078
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02139.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.31.3e-44111621128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk................kvka....eekewyf 60 
                                   lppGfrF+Ptdeel+v+yL++++ +++l+++  i++++i+ ++P+dL p                 +       +e e yf
  Zpz_sc02139.1.g00010.1.am.mk  11 LPPGFRFRPTDEELIVHYLRRRAFASPLPAAVDIPDIRILAHDPSDLlPPgelseaslaerslqaaH--RrggwNEPERYF 89 
                                   79***************************9666**************63246899999888765431..1333355588** PP

                           NAM  61 FskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   F++++ ky +g+r+nrat +gyWkatgk+k+v ++     +  lvg+k++Lvfy+gr p+g+ktdWvmheyrl
  Zpz_sc02139.1.g00010.1.am.mk  90 FTCKEAKYVKGRRANRATGAGYWKATGKEKPVAVAapggnQAVLVGMKRSLVFYRGRPPSGSKTDWVMHEYRL 162
                                   ********************************999897655666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-448167IPR003441NAC domain
PROSITE profilePS5100543.36311180IPR003441NAC domain
PfamPF023652.3E-2612162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDAKEAVRRR LPPGFRFRPT DEELIVHYLR RRAFASPLPA AVDIPDIRIL AHDPSDLLPP  60
GELSEASLAE RSLQAAHRRG GWNEPERYFF TCKEAKYVKG RRANRATGAG YWKATGKEKP  120
VAVAAPGGNQ AVLVGMKRSL VFYRGRPPSG SKTDWVMHEY RLAGAGLAPC RRAQAGEASR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-351116215140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02139.1.g00010.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0919155e-62FP091915.1 Phyllostachys edulis cDNA clone: bphyem115l12, full insert sequence.
GenBankFP0991855e-62FP099185.1 Phyllostachys edulis cDNA clone: bphyem106m22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809222.15e-90NAC domain-containing protein 83
SwissprotQ9FY934e-48NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A3L6RAA25e-90A0A3L6RAA2_PANMI; NAC domain-containing protein 83
STRINGSb08g014060.14e-89(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-42NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]