PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02141.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 265aa    MW: 28174.4 Da    PI: 6.7054
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02141.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-15123164447
                                   S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   ++ eE+ellv+++++lG++ W +Ia +++ gRt+k++ s+w++ 
  Zpz_sc02141.1.g00030.1.am.mk 123 FSDEEEELLVKLHALLGNR-WLLIAGRLP-GRTGKEVESHWNST 164
                                   89*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.904113169IPR017930Myb domain
SMARTSM007171.2E-12119167IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-11121169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-16123166IPR009057Homeodomain-like
CDDcd001676.65E-11123162No hitNo description
PfamPF002493.7E-13123163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVFPAEPSAG RLLVPILSAQ AIRWKRNQRL ASRVLALAAR GVNAPDLAAQ PQAGTGGRPT  60
DRSSSRAPAQ TGDEEEATPA PAWGRRQAGE AAATAAGRGT LGSYSIVAGA GVDSAYSGGS  120
KGFSDEEEEL LVKLHALLGN RWLLIAGRLP GRTGKEVESH WNSTMRRKLE CVAVVHHDSH  180
RSMTRLAPAD GEQQRRDPCD QLHLGEVECK AKHPNCCLSS NDDDSVSDAG SYCGARQELA  240
CGVNLELTLA TPCFYVGENE KVADH
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02141.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2780155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.15e-17myb domain protein 4