PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02156.1.g00070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 626aa    MW: 69961.3 Da    PI: 6.2575
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02156.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.62.3e-342032942102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+ye++ed+++++++sw   g sfvv+++ ef++++LpkyFkhsnf+SF+RQLn+YgF+k++ e+         weF+
  Zpz_sc02156.1.g00070.1.am.mk 203 FLIKTYEMVEDPATNRVVSWGPGGASFVVWNPPEFSQELLPKYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFA 274
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F +g ++ll++i+r+k 
  Zpz_sc02156.1.g00070.1.am.mk 275 NEDFIRGYTHLLKNIHRRKP 294
                                   *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.11E-36198292IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.1E-38199292IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-62199292IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-19203226IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-30203292IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-19241253IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340242266IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-19254266IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MLVVGSSDDQ QRHERAKQGG WVAETGATRR IGQSNIPCND RRKPVRMRAR PRPSGGGDGS  60
SQSPPYKTSA PRRHRWRQPA TDPLLILPPR RAEVRNARTE SERAAVTWAG LVVSTKWFFS  120
GSAPGAARAS LICLNPSIGM QVELVDQKGS LTPFFTASNL VRIPAAVERE LCASPLWEKE  180
TAGVGMEGSQ SRSGGGSSSP PPFLIKTYEM VEDPATNRVV SWGPGGASFV VWNPPEFSQE  240
LLPKYFKHSN FSSFIRQLNT YGFRKIDPER WEFANEDFIR GYTHLLKNIH RRKPVHSHSP  300
QNQVNAPLAE SERREYEDEI NRLKYEKSLL LADLQKHHQQ QCVIDWQMQS LEDRLMQMDQ  360
RQKNIVASLC DILRSNGGVS GSLLETDHFS KKRRVPKKIG FFADDAAAEE RQVPFLPTTG  420
AVRETPSMFP AHPVSAEPFD RMEMSLVSLE KFIQRASEGS AEDLFACSAA PSPVVPVGEV  480
QSAPMETNID VQPSTGHVYS SAGFAESSWY AQSPMLLLPD LHEDAPRTAE VDMNSDTTTA  540
DTSQDEVTTE TGGSHEPAKV NDLFWERFLT ETPRFGDCKR EPTEANEELT VAVDRSSLYH  600
RDRVDQITEQ MEQLASAEDA EVKRLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2418529211129Heat shock factor protein 1
5d5v_B3e-2418529211129Heat shock factor protein 1
5d5v_D3e-2418529211129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02156.1.g00070.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961415.10.0heat stress transcription factor A-4d
SwissprotQ93VB51e-157HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLK3Z6570.0K3Z657_SETIT; Uncharacterized protein
STRINGSi022026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-68heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]