PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02156.1.g00130.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 223aa    MW: 23818.8 Da    PI: 10.2086
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02156.1.g00130.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.7e-31140200159
                                   ---SS-EEEEEEE--TT-SS-E..EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefpr..sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK vk+s fpr  sYYrCt++ C+vkk+v+r a+d++vv++tYeg Hnh+
  Zpz_sc02156.1.g00130.1.sm.mk 140 LDDGYRWRKYGQKAVKNSAFPRlkSYYRCTHHACNVKKQVQRLAKDTSVVVTTYEGVHNHP 200
                                   59*******************8889***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-31126200IPR003657WRKY domain
SuperFamilySSF1182901.19E-26132201IPR003657WRKY domain
PROSITE profilePS5081126.016135202IPR003657WRKY domain
SMARTSM007742.1E-36140201IPR003657WRKY domain
PfamPF031068.7E-24141200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEDSLRGAHQ HQLSEFLALT STGAAPRPQE KQQGSSNVAA THLAPTGAVS CSPLVDWTSL  60
LLSSAPGLPQ SQKHAAAGAC EQENAGGGEG SSTVTTATAS GGGSSSCKMV KAGRKGGGRG  120
KKKASRPRFA FQTRSESDVL DDGYRWRKYG QKAVKNSAFP RLKSYYRCTH HACNVKKQVQ  180
RLAKDTSVVV TTYEGVHNHP CEKLMEALNP ILRQLQLLTQ LGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24130199774Probable WRKY transcription factor 4
2lex_A2e-24130199774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02156.1.g00130.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9580741e-100EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148624.13e-73WRKY23 - superfamily of TFs having WRKY and zinc finger domains
SwissprotQ9FFS34e-53WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLK7VHJ97e-73K7VHJ9_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G015433_P011e-73(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.15e-48WRKY DNA-binding protein 24