PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02168.1.g00100.1.am.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

S1Fa-like

Protein Properties

Length: 208aa MW: 22601.2 Da PI: 10.5327

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02168.1.g00100.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	132.9	8.3e-42	139	208	2	70
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v+++e+ kGlnPG+ivllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvskkklkreklkqGv++PGe Zpz_sc02168.1.g00100.1.am.mkhc 139 NVVIEEVsKGLNPGMIVLLVVASFLLLFFVGNYALYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 208 56777877*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	2.0E-7	140	208	No hit	No description
Pfam	PF04689	1.0E-38	144	208	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
RSGRGVEEVA EVHQQQKGMF SQFLRSYGSS PRALVLTSSF LYLSSDSSVS SNQRSVFGLD 60 QATAMAEQFA DSAVRKFFPS KGNPGCSSVI LSLSLALDIL LREPHATFRS DVNFLVPTSF 120 GSVSHLGLLS PAMRTVANNV VIEEVSKGLN PGMIVLLVVA SFLLLFFVGN YALYVYAQKT 180 LPPKKKKPVS KKKLKREKLK QGVSAPGE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02168.1.g00100.1.am.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63