PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02186.1.g00030.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 225aa    MW: 23720.2 Da    PI: 6.1603
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02186.1.g00030.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000265476123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C  C++ F++   L  H++ H
  Zpz_sc02186.1.g00030.1.sm.mk 54 YECVFCKRGFTTAQALGGHMNIH 76
                                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-65280No hitNo description
PROSITE profilePS5015710.995481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MESGSNRESK VGDEAMTTSP PGQEDQAAVA GAGEEVAAAS PPRAPAAAGP KPYYECVFCK  60
RGFTTAQALG GHMNIHRRDR ARPARESPAG GAVPTVSRNI EWYNKYRRLV SSYPSVPTSS  120
TAPMPVGSSS GSNLGMYYYP SASSGVTAAV DAEGVISPSS VSPRELSLFG AATRDHHDLH  180
LGLGIHGEAD DEGSCMPPEG SSERQAGEPE KELDLELRLG RRPRH
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02186.1.g00030.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805746.11e-64uncharacterized protein LOC112884551
TrEMBLA0A1E5WER23e-67A0A1E5WER2_9POAL; Uncharacterized protein
STRINGSi025069m7e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-14C2H2 family protein