PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02195.1.g00040.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 305aa    MW: 32459.6 Da    PI: 10.4301
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02195.1.g00040.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-15121165347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT++E+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  Zpz_sc02195.1.g00040.1.sm.mkhc 121 PWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 165
                                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.171114170IPR017930Myb domain
SuperFamilySSF466893.14E-18115171IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-19117169IPR006447Myb domain, plants
SMARTSM007171.5E-11118168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-11118164IPR009057Homeodomain-like
CDDcd001676.05E-10121166No hitNo description
PfamPF002492.5E-12121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MARKCSSCGN NGHNSRTCSG GYRSMESTGV CGSSGGVRLF GVQLHVGSSP TPMKKCFSME  60
CLSSSAPAYY AAALAGACSS SPSASSSSSL VSVDETAEKM TNGYLSDGLM GRAQERKKGV  120
PWTEDEHRRF LAGLEKLGKG DWRGISRHFV TTRTPTQVAS HAQKYFLRQS SLTQKKRRSS  180
LFDVVENAEG PTRVNGRLKL RDETSSMSET EFPALSLGVS RRPKPEHALP PGLALAPRFS  240
ASTSSSGSAS PNLIAPRHPS LTTPKPAPVS LQAPDLELKI STARPTDQAA GPPPRTPFFG  300
TIRVT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02195.1.g00040.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625837.11e-113transcription factor MYBS3-like
TrEMBLA0A0A9ESZ51e-144A0A0A9ESZ5_ARUDO; Uncharacterized protein
STRINGORUFI01G06450.11e-117(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-45MYB_related family protein