PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02210.1.g00100.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 341aa    MW: 35897.9 Da    PI: 10.8135
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02210.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.8e-083257227
                                  -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                  kt+ C  +     Ck+G +C+FaHg+
  Zpz_sc02210.1.g00100.1.am.mk 32 KTRMCTKYNTAEGCKFGTKCHFAHGE 57
                                  9***********************96 PP
2zf-CCCH38.32.3e-12199222125
                                   --S---SGGGGTS--TTTTT-SS-S CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                                   ykt+lC +f++ GtC +GdrC+FaH
  Zpz_sc02210.1.g00100.1.am.mk 199 YKTKLCENFLK-GTCTFGDRCHFAH 222
                                   9**********.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.7E-132762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-72961IPR000571Zinc finger, CCCH-type
SMARTSM003560.0723057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2353058IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.66E-1494169IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.9E-1497167IPR004088K Homology domain, type 1
SMARTSM003222.8E-1098168IPR004087K Homology domain
PROSITE profilePS5008414.73999163IPR004088K Homology domain, type 1
PfamPF000138.1E-11101163IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.0E-12197223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-8197223IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-8198224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.281198225IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-10199222IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MLNLGSPAVS APTRIPVDLA AVANSHRAST SKTRMCTKYN TAEGCKFGTK CHFAHGEREL  60
GKPAYMSRED PPMGGRFGGR PDPHLQATMG PPAGNFGATA TAKISVDASL AGGIIGKGGA  120
NTKHISRVTG VKLSIRDHES DPNLKNIELE GNFDQIKQAS DMVGELIMTI SASMPTKNPS  180
GATALAGRGG SGSGGRSNYK TKLCENFLKG TCTFGDRCHF AHATRLSAPR LHHDIGSTVG  240
AREISSSASA SLFRLFRMAT AAALAPVSPA LLPSLRGRRH DRTRLSPRRP RHAVGRCLAT  300
AQTFQGGPAA SYAREMERLS AKESLLLAVS SSSFSLLTLT S
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02210.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066467e-35AL606646.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence.
GenBankAP0149607e-35AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126127e-35CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8550387e-35CR855038.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H1005F08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447282.11e-121zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK14e-96C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A1E5VYA01e-142A0A1E5VYA0_9POAL; Zinc finger CCCH domain-containing protein 31
STRINGSb06g032000.11e-120(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-49C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]