PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02228.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 619aa    MW: 67671.9 Da    PI: 9.6733
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02228.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.52.8e-492553802128
                           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                   +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgy
  Zpz_sc02228.1.g00080.1.am.mk 255 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGY 334
                                   79***************************.89***************8778899*************************** PP

                           NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   Wkatg d+ + +++++ +glkktLvfy+g+apkg++++W+m+eyrl
  Zpz_sc02228.1.g00080.1.am.mk 335 WKATGADRMIRAENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 380
                                   ********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-55254401IPR003441NAC domain
PROSITE profilePS5100555.354254401IPR003441NAC domain
PfamPF023652.8E-24256380IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MLPAGLLAKM EPLNRRCVLC SVTRYEHVLK RFVSRPALRW DASGIQDEKR RPNHYKEHCR  60
SMHTFTLQKE SQDQKRHRSS LGRSRTQTQK AEAEIDTPIQ HPWAVMDAQA ATASSCPLAE  120
PSLSPYLTRS AVAVRPPPLL ERRGRAAGPL PSPRELLIIP PPSIRSPPAR RSCARACVAW  180
RHASLIASCV RSIDRSRWCL EEHGEEGEST AAVGAMSSGR LENGHGAAAP AVEGGGGGGR  240
GGEGGGDSHE DDLVMPGFRF HPTEEELIEF YLRRKVEGKR FNVELITFLD LYRYDPWELP  300
ALAAIGEKEW FFYVPRDRKY RNGDRPNRVT ASGYWKATGA DRMIRAENNR PIGLKKTLVF  360
YSGKAPKGVR SSWIMNEYRL PPDDTDRYNK TEISLCRVYK RSGIDDGHGS RPSSARSTPS  420
SGATAQRDTN KQAASSSSTP KPTPTPTPPA TPSKLHLLHG ECTSPLAIAD HARGHKAPSA  480
PRQQKPSSAY LSATSASADG DHQHEGTAAT PYEHPRNTNP FASTYSLLSL VNAAAMGTSS  540
AAAIDELSTL VGHGSPSTAY FNHHQQAGGH SHFLSLPTAP SSSQPVLPVS LQAAISDKIW  600
EWNTIPDAAG RDYRSAGFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-5225640119165NO APICAL MERISTEM PROTEIN
1ut4_B9e-5225640119165NO APICAL MERISTEM PROTEIN
1ut7_A9e-5225640119165NO APICAL MERISTEM PROTEIN
1ut7_B9e-5225640119165NO APICAL MERISTEM PROTEIN
4dul_A9e-5225640119165NAC domain-containing protein 19
4dul_B9e-5225640119165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237245GGRGGEGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02228.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8197620.0FR819762.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC012 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970843.11e-174NAC domain-containing protein 35
TrEMBLA0A1E5WH591e-174A0A1E5WH59_9POAL; NAC domain-containing protein 35
STRINGSi001651m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.15e-98NAC domain containing protein 35