PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02244.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 204aa    MW: 21669.3 Da    PI: 6.009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02244.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000234466123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+Cp C+k+F  +  L  H++ H
  Zpz_sc02244.1.g00060.1.am.mk 44 YPCPFCDKTFLKSQALGGHQNAH 66
                                  99**********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.33E-74071No hitNo description
Gene3DG3DSA:3.30.160.601.6E-54070IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.7594471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVWVLQSTTL RAQTTENLAQ PSLLMECSSP ADGEGDTGGG KRMYPCPFCD KTFLKSQALG  60
GHQNAHKKER SAWNPHVYEG GQLEAAEPYP VVGSVSGIAT SMPITALSFL GGSTTVRAEI  120
EGDHYTDECG SDGVPSFRAK MQRRRAALFA PAEMRSAAAD GGTVDMFNWA RASHSVAVAS  180
ASCPDGSTSA TLPSREKLDL ELKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02244.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461473.15e-40uncharacterized protein LOC8081128
TrEMBLA0A1E5V9N38e-39A0A1E5V9N3_9POAL; Uncharacterized protein
TrEMBLC5X9L41e-38C5X9L4_SORBI; Uncharacterized protein
STRINGSb02g003190.12e-39(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP384714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.15e-10C2H2 family protein