PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02291.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family E2F/DP
Protein Properties Length: 228aa    MW: 24565.1 Da    PI: 5.1934
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02291.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP26.31.3e-0879117338
                         E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....d 38 
                                     +++Lr++++k   ++ek+e+ g++t+neva+eLv+e     +
  Zpz_sc02291.1.g00060.1.sm.mkhc  79 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpnN 117
                                     689*******...*****999*************99776541 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-1873124IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013720.001777193IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-680113IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440741.07E-5134158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVSGSPSSRS EQHAPDGAGK GPAVAAPGPS ASASTPVSES TFLRLNTLDI NGDDAPSSQA  60
STSKKKKRGS RAAGPDKGNR GLRQFSMKVC EKVESKGRTT YNEVADELVA EFSDPNNNIE  120
APDPDNPNAE LQDQTRPHAT VEVEISEDMQ LVHFDLNRTE KAEPSADAPE SWRSTTSTGI  180
MPRRARETVQ NEGFLLLDST SKERTSRRVD RSAPLGVFPV DRLCMLAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-1671121151PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02291.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169170.11e-64Transcription factor-like protein DPB
SwissprotQ9FNY25e-36DPB_ARATH; Transcription factor-like protein DPB
TrEMBLC0PCD83e-63C0PCD8_MAIZE; Transcription factor-like protein DPB
STRINGGRMZM2G063387_P014e-64(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.15e-38Transcription factor DP