PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02319.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 419aa    MW: 46932.3 Da    PI: 8.0249
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02319.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.5e-1182112434
                                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                                      k err+++NReAAr+sR+RKka++++Le+ 
  Zpz_sc02319.1.g00060.1.sm.mkhc  82 AKTERRLAQNREAARKSRLRKKAYVQQLETS 112
                                     799*************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-779145IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.6E-881125No hitNo description
PROSITE profilePS502179.25581125IPR004827Basic-leucine zipper domain
PfamPF001703.1E-882116IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.86E-783126No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
PfamPF141441.5E-27164236IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSQMSQMELV SPASSAQRQE VMMVTTDDYS YYKPGLAAAA PPPPVPAAAP SFQQQPMQQL  60
HGGDHDKRKH GSTRKDGKLV DAKTERRLAQ NREAARKSRL RKKAYVQQLE TSRVRLQQVE  120
HELQRARSQG LFVGGCSAAG DMSSGAVMFD MEYARWLEDD SKRLAELHGG LQAQLLDSNL  180
GLIVEECTQH YDELFQLKAE LARSDVFHLL TGTWATPAER CFFWMGGFRP SELLKVRSSR  240
STPVRVCSCT AVLRPCILLG MQILIPQLDP LTEQQVLGIC NLQQSSEQAE EALAQGLHQL  300
HQSLADTVAA GTLNDGAAVP NYRSLMAVAL EKLASLESFY QQADSLRQQT LHQMRRILTT  360
RQTARCFLSI GEYYRRLRAL SSLWASSPRE NFNGTENFSP TVTELQVMHQ QQQNQFSGF
Functional Description ? help Back to Top
Source Description
UniProtRequired for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02319.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0369490.0AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001104893.10.0transcription factor LG2
SwissprotO490670.0LG2_MAIZE; Transcription factor LG2
TrEMBLA0A2T8IJA50.0A0A2T8IJA5_9POAL; Uncharacterized protein
STRINGGRMZM2G060216_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-126bZIP family protein
Publications ? help Back to Top
  1. Walsh J,Freeling M
    The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
    Plant J., 1999. 19(4): p. 489-95
    [PMID:10504571]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]