PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02362.1.g00070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 167aa    MW: 18280.3 Da    PI: 8.7273
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02362.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.98e-053456123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C+ C++ F++   L  H+++H
  Zpz_sc02362.1.g00070.1.am.mk 34 YSCSFCKREFRSAQALGGHMNVH 56
                                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.72E-63161No hitNo description
PROSITE profilePS5015711.243461IPR007087Zinc finger, C2H2
PfamPF139122.3E-63457IPR007087Zinc finger, C2H2
SMARTSM003550.0063456IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MQRPATAYSF ASTMEREQQP WSFMASFNWP PRSYSCSFCK REFRSAQALG GHMNVHRRDR  60
ARLRHTGSHS PPPPPQPPAN ASSKAPAALA KPPPPVPNLN YPPPLLPYHR DGGKKRSWTD  120
DVSTGLGVGL LQSSRTTAAS STDPAVGPHP EDDDDDDLDL ELRLGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-142956229superman protein
2l1o_A4e-142956229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02362.1.g00070.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804370.14e-37transcriptional regulator SUPERMAN-like
TrEMBLA0A3L6QJZ52e-37A0A3L6QJZ5_PANMI; Transcriptional regulator SUPERMAN-like
STRINGSb04g000270.16e-34(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-23C2H2 family protein