PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02370.1.g00130.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 252aa    MW: 26511.8 Da    PI: 6.5238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02370.1.g00130.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.3e-056285326
                                  HHHHHHHHHHHHHHHHHHHHHHCT CS
                           HLH  3 rahnerErrRRdriNsafeeLrel 26
                                  r+h e+E+rRR+ri+s +++Lr +
  Zpz_sc02370.1.g00130.1.am.mk 62 RNHREAEKRRRERIKSHLDRLRNI 85
                                  78********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.0E-462107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-862111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MFPAEVSALP LQGDGGVVPL LPPFFMGSIW QADAGGSASA SEEDEAAAAA AAAHDRALAA  60
SRNHREAEKR RRERIKSHLD RLRNIDKASL LAKAVERVRD LKQRVAGVSD AAPAHLFPTE  120
HDEIVVLASG GAVFEASVCC DDRSDLLPEL IETLRGLRLR TLRAEMATLG GRVRNVLVLA  180
RDTTGADIHG GGVIAEDDGG YGRADLAGSI DGNGGDFLKE ALRALVERPG AGGAGDRPKR  240
RRVSGTNMQA AA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238242KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02370.1.g00130.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279661e-109KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981312.12e-98transcription factor bHLH106-like
SwissprotO806748e-42BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A368SD615e-97A0A368SD61_SETIT; Uncharacterized protein
STRINGSb01g003830.14e-89(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-30bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]