PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02372.1.g00140.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 481aa MW: 52680.3 Da PI: 8.7392

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02372.1.g00140.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.1	1.2e-11	316	359	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR r+N+ + Lr ++P+ +K+sK +L A+++Ik+Lq Zpz_sc02372.1.g00140.1.am.mk 316 DAERRRRGRLNNNILALRAVVPNI-----TKMSKEHTLSDAIDHIKNLQ 359 68*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.157	309	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-16	311	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-9	315	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-13	315	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-14	316	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
DSGRAALDSR TQRERRQTRG GTGSGRVAAA RFEGAARRSQ GGQARRRPEK CVDQPERKER 60 EQSHGRVVGT GSRVNGGAYS EKVTAFPEPR GKRRTHLPES SRKTMAVTKK AAVCFWLLSS 120 EEVRVSDAAD CIFIIHPFCK HDGDCDKPCE NESDGFDGYI YTQGMCRDWT CFCCAPDHHK 180 NKGKPGGPHK PLAPDHSLPE AISNLSFTLN GAAPTNSLGT RGAVALAFKA SPLRFLSCRM 240 PRAYNFISHP QPRGEGVGPS CVRGEAAMPR RQRARSSEEV KVEDFVASVL NFAGGEDDDG 300 QPPAAATTVF KSKNLDAERR RRGRLNNNIL ALRAVVPNIT KMSKEHTLSD AIDHIKNLQN 360 QVQELQQQLD ESPGEVLEKH GSASSSESFA AAENTQYQGL VELAPLAPQK YHLKVFCKKS 420 GVFTKVLEAL CSYNAQVTSL STITFYGYAE SVFSIEVKGE QDVVMMELRS LLTGIVEVPS 480 N

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

DSGRAALDSR TQRERRQTRG GTGSGRVAAA RFEGAARRSQ GGQARRRPEK CVDQPERKER  60
EQSHGRVVGT GSRVNGGAYS EKVTAFPEPR GKRRTHLPES SRKTMAVTKK AAVCFWLLSS  120
EEVRVSDAAD CIFIIHPFCK HDGDCDKPCE NESDGFDGYI YTQGMCRDWT CFCCAPDHHK  180
NKGKPGGPHK PLAPDHSLPE AISNLSFTLN GAAPTNSLGT RGAVALAFKA SPLRFLSCRM  240
PRAYNFISHP QPRGEGVGPS CVRGEAAMPR RQRARSSEEV KVEDFVASVL NFAGGEDDDG  300
QPPAAATTVF KSKNLDAERR RRGRLNNNIL ALRAVVPNIT KMSKEHTLSD AIDHIKNLQN  360
QVQELQQQLD ESPGEVLEKH GSASSSESFA AAENTQYQGL VELAPLAPQK YHLKVFCKKS  420
GVFTKVLEAL CSYNAQVTSL STITFYGYAE SVFSIEVKGE QDVVMMELRS LLTGIVEVPS  480
N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KRRTH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02372.1.g00140.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11982	30	36