PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02377.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 417aa    MW: 45110.3 Da    PI: 6.7358
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02377.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.91.5e-85354152374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal 81 
                                   ++lLl+cA a++s+d +laq++++ l+++as +gdp+qRl++ +++AL ar  r  ++  +  lp++ ++    +++++++
  Zpz_sc02377.1.g00080.1.am.mk  35 QQLLLHCAAALESNDVTLAQQAMWVLNNIASAQGDPNQRLTSWLLRALVARACRlCGPAAAVRLPVNGAP---LERAMSVT 112
                                   699***************************************************4455555555555555...66666666 PP

                          GRAS  82 kl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skee 157
                                   +l  +++++P+++f++ + N aIl+av+ + +vH++D+++++++QWp++++ L++Rp+gpp lRiT+ ++  ++    + +
  Zpz_sc02377.1.g00080.1.am.mk 113 ELadYVDLTPWHRFGFTASNGAILRAVADSAAVHVVDLSVTHCMQWPTFIDVLSKRPGGPPALRITVPSARPAVpplLAVS 193
                                   6678**************************************************************999966668887888 PP

                          GRAS 158 leetgerLakfAeelgvpfefnvl...........vakrledl.........eleeLrvkpgEalaVnlvlqlhrlldesv 218
                                    +e+g rL +fA++ gv++efnv+           +                ++ +L ++ gEal+Vn++  l +++    
  Zpz_sc02377.1.g00080.1.am.mk 194 DKELGLRLVNFAKSKGVQLEFNVVktkapsaekldA------SrhdlasvlsDPPSLGLRDGEALVVNCQSWLRHVV---- 264
                                   89**********************887775544331......2333344466788889999*************998.... PP

                          GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                                     +s rd++L +v+sl+P++v+v++++ad++s+s++ r++ ++++++ lfd+le+++pr+s +r   E + +g++i++vv 
  Zpz_sc02377.1.g00080.1.am.mk 265 --PSSRDTFLYAVRSLNPRLVTVTDEDADLDSPSLASRIAGCFNFHWILFDALETSAPRDSPWRLEHETA-VGKKIESVVG 342
                                   ..66789**************************************************************9.********** PP

                          GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     g+   er e+ e+  er+++ GF  v+++e++a+q+++ll++++  g+ v+ e++ l+l+Wk++  v +SaW+
  Zpz_sc02377.1.g00080.1.am.mk 343 VDGDG-AERSESGERLAERMRRNGFVGVRFEEEEAAQVRRLLSEHA-TGWGVKREEDMLLLTWKGHGAVYTSAWT 415
                                   ****9.****************************************.99*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.4898396IPR005202Transcription factor GRAS
PfamPF035145.1E-8335415IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEQEVRSGGG GGGGGLRAHS SVCFSGALID GPRIQQLLLH CAAALESNDV TLAQQAMWVL  60
NNIASAQGDP NQRLTSWLLR ALVARACRLC GPAAAVRLPV NGAPLERAMS VTELADYVDL  120
TPWHRFGFTA SNGAILRAVA DSAAVHVVDL SVTHCMQWPT FIDVLSKRPG GPPALRITVP  180
SARPAVPPLL AVSDKELGLR LVNFAKSKGV QLEFNVVKTK APSAEKLDAS RHDLASVLSD  240
PPSLGLRDGE ALVVNCQSWL RHVVPSSRDT FLYAVRSLNP RLVTVTDEDA DLDSPSLASR  300
IAGCFNFHWI LFDALETSAP RDSPWRLEHE TAVGKKIESV VGVDGDGAER SESGERLAER  360
MRRNGFVGVR FEEEEAAQVR RLLSEHATGW GVKREEDMLL LTWKGHGAVY TSAWTPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-523741736421Protein SHORT-ROOT
5b3h_E1e-523741736421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02377.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806480.10.0scarecrow-like protein 32
TrEMBLA0A2S3HAR10.0A0A2S3HAR1_9POAL; Uncharacterized protein
TrEMBLA0A2T7EBX30.0A0A2T7EBX3_9POAL; Uncharacterized protein
TrEMBLA0A3L6R9I70.0A0A3L6R9I7_PANMI; Uncharacterized protein
STRINGSi022117m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.13e-93GRAS family protein