PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02398.1.g00040.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 439aa MW: 46790.3 Da PI: 9.0739

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02398.1.g00040.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.5e-12	233	276	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+r+N+++ eLr+++P+ +K++Ka++ + A+ YI +Lq Zpz_sc02398.1.g00040.1.am.mk 233 VMERDRRRRLNEKLYELRSVVPNI-----TKMDKASVIRDAIAYIEKLQ 276 68*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.815	226	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-16	228	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.33E-14	229	280	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-14	232	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-14	232	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-10	233	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MTRTGGQQPT GAAVYGRTTQ GPAPACPVLL RLRSLTGGIH PPDVLLAAHA GHQMLSALSA 60 LGIASLELLR TPTPTSSSYS VPHKARTLSH KNMVISEQTV ASSTSAGGCN LRAACLKWSP 120 AAGRAAGQRP METDVLGVGF DFYWTPPPGL VLDAHDLDLA GFDSCSMYMP AEAETAADST 180 SGLCPYREGS NSPDGANSSN AAAVPTASSS PPSPQPLLLL GGGGGHAGSK NMVMERDRRR 240 RLNEKLYELR SVVPNITKMD KASVIRDAIA YIEKLQEEER RVLAEISALE SSTAVRSENA 300 GRDADDADSL PRRKKPRRVS PADDTRAASS LPLKILEVQV SKAWEKLAVR SVWCSRGRDA 360 VPKVCRALEP LRLRIVTATV AAVGDTVVHT MFAQVTPNNN SLLLTDIAGA WLAAPYRTLW 420 LHASLSSSCL WDRRMTSTP

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MTRTGGQQPT GAAVYGRTTQ GPAPACPVLL RLRSLTGGIH PPDVLLAAHA GHQMLSALSA  60
LGIASLELLR TPTPTSSSYS VPHKARTLSH KNMVISEQTV ASSTSAGGCN LRAACLKWSP  120
AAGRAAGQRP METDVLGVGF DFYWTPPPGL VLDAHDLDLA GFDSCSMYMP AEAETAADST  180
SGLCPYREGS NSPDGANSSN AAAVPTASSS PPSPQPLLLL GGGGGHAGSK NMVMERDRRR  240
RLNEKLYELR SVVPNITKMD KASVIRDAIA YIEKLQEEER RVLAEISALE SSTAVRSENA  300
GRDADDADSL PRRKKPRRVS PADDTRAASS LPLKILEVQV SKAWEKLAVR SVWCSRGRDA  360
VPKVCRALEP LRLRIVTATV AAVGDTVVHT MFAQVTPNNN SLLLTDIAGA WLAAPYRTLW  420
LHASLSSSCL WDRRMTSTP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02398.1.g00040.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823076.1	6e-87	transcription factor bHLH35-like isoform X1
TrEMBL	A0A0A9IMR0	1e-98	A0A0A9IMR0_ARUDO; Uncharacterized protein
STRING	Pavir.Gb02374.1.p	6e-83	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1044	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.2	1e-33	bHLH family protein