PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02399.1.g00050.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 236aa    MW: 24598.5 Da    PI: 5.2776
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02399.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-162876355
                           AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  ykGVr ++ +g+Wv+e+r p   g ++r++lg++ tae Aa+a++aa ++l+g
  Zpz_sc02399.1.g00050.1.sm.mk 28 YKGVRMRS-WGSWVSEVRAP---GAKTRIWLGSHSTAEAAARAYDAALLCLRG 76
                                  9****998.*******9998...445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-262786IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-162787IPR016177DNA-binding domain
SMARTSM003808.8E-292792IPR001471AP2/ERF domain
PROSITE profilePS5103220.7842786IPR001471AP2/ERF domain
PfamPF008473.9E-102876IPR001471AP2/ERF domain
CDDcd000189.80E-152888No hitNo description
PRINTSPR003673.0E-82839IPR001471AP2/ERF domain
PRINTSPR003673.0E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVKTAALCND TAAAAPAAAK RNGGKRTYKG VRMRSWGSWV SEVRAPGAKT RIWLGSHSTA  60
EAAARAYDAA LLCLRGSAAA ADLNFPVQFP INDIPHAAMS PKSIQRVAAA AAAATSATAF  120
ASRADDADVA CCSGDDSTPA CSSSSGSDAS AVSSPGSTVT SEAETDAACC HGDQKLRDGD  180
VVDYSLLADI DAYFPSPKCM EYAMMDPCSA FFAPTPMAMM SDDDVCCRWY NKSYNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02399.1.g00050.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3708701e-69AK370870.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2118P17.
GenBankAK3761001e-69AK376100.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3114M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964908.18e-71ethylene-responsive transcription factor ERF014
TrEMBLK3Y1B32e-69K3Y1B3_SETIT; Uncharacterized protein
STRINGSi007977m3e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.15e-23ERF family protein