PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02399.1.g00100.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 261aa    MW: 28361.7 Da    PI: 6.7359
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02399.1.g00100.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57354.53.3e-1750138397
                        DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 
                                   +q+lws+ De++lL G   fk + g+ p   d+ ++yef+k+sis +  k  +  K++rLK Kf++           + s+
  Zpz_sc02399.1.g00100.1.sm.mk  50 AQKLWSDADEVALLTGAAAFKGRSGVAPRLpDMGELYEFLKDSISPHLDKAKVYYKLKRLKSKFQHSAPG-------ASST 123
                                   79************************98877**********************************99888.......7899 PP

                        DUF573  83 ehdqkifelskkiWg 97 
                                   +hd+ + +ls  +Wg
  Zpz_sc02399.1.g00100.1.sm.mk 124 PHDRLVRDLSADLWG 138
                                   999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-1651138IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
SRRRAPAGLG AASRKSDRKR KPRAFPDSTT LAAVAAVAAA PSASSSRGAA QKLWSDADEV  60
ALLTGAAAFK GRSGVAPRLP DMGELYEFLK DSISPHLDKA KVYYKLKRLK SKFQHSAPGA  120
SSTPHDRLVR DLSADLWGAE LAHQVEEGER PEEDGADDEE AEGVNAIQVH TGGDSEGPQP  180
ERLPIVREVL GEHWRLNRQA LSGVSLEKGL LQVAPEKADA AEAKWRQQLE ADMHMQMRWH  240
DLGKEAGQPN LPFIADADRQ T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120RRRAPAGLGAASRKSDRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02399.1.g00100.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436676.22e-81STOREKEEPER protein
TrEMBLA0A0A9S6C65e-86A0A0A9S6C6_ARUDO; Uncharacterized protein
STRINGSi006601m5e-78(Setaria italica)
STRINGGRMZM2G008558_P021e-78(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-09DNA-binding storekeeper protein-related transcriptional regulator