PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02416.1.g00060.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 323aa    MW: 37940.5 Da    PI: 10.3639
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02416.1.g00060.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.72.7e-2270152186
                        trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                                     +W +qe+++Li+ar e+e++  + ++++k+ We+v++ +rerg++r++ qCk+kw+nl +ryk  ++++ ++     ++
  Zpz_sc02416.1.g00060.1.am.mkhc  70 QWGEQETRELIAARGEIEREAVAaRRSAKTMWEAVAAWLRERGYRRTADQCKCKWKNLVNRYKGKETSDTDN----GRQ 144
                                     7****************98877526899************************************99999984....568 PP

                        trihelix  79 cpyfdqle 86 
                                     +p+f++l+
  Zpz_sc02416.1.g00060.1.am.mkhc 145 FPFFEELH 152
                                     ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-2169153No hitNo description
CDDcd122031.10E-1669135No hitNo description
PROSITE profilePS500907.36471128IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
KKKSVASRDQ QANRRKKADG ARRACSQQPS SRRHRRSRES PLVRPSGAGW RGGEMMEAGG  60
VGGRDERVPQ WGEQETRELI AARGEIEREA VAARRSAKTM WEAVAAWLRE RGYRRTADQC  120
KCKWKNLVNR YKGKETSDTD NGRQFPFFEE LHAVFTERAR NMQRQLLESE SGATVKKKLK  180
RPSGNQTSEE SDDEEDCGEE SEGDKPMHGR KRRADDKKQQ PRRISEKSRV GTSSIHDLLQ  240
DFLVQQQRID MQWREMTEKR AQERLLLEQE WRQTMQKLEQ ESLMLERSWM EREEQRRMRE  300
EARAEKRDAL LTTLLNKLLQ EDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02416.1.g00060.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448463.11e-133trihelix transcription factor GT-3b
TrEMBLA0A059Q3B01e-139A0A059Q3B0_9POAL; Transcription factor
STRINGPavir.J40572.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-27Trihelix family protein