PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02430.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 363aa    MW: 39826 Da    PI: 10.8108
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02430.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.91.5e-31184281190
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gL
  Zpz_sc02430.1.g00080.1.am.mk 184 FDKTVTPSDVGKLNRLVIPKQHAEKHfplelpsAGGESKGVLLNFEDAEGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 264
                                   89*******************************5556799***************************************** PP

                                   -TT-EEEEEE-SS.SEE CS
                            B3  75 kegDfvvFkldgr.sef 90 
                                   ++gD+v F+++    ++
  Zpz_sc02430.1.g00080.1.am.mk 265 NAGDVVGFYRTAAgADT 281
                                   *********76544554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.14435106IPR001471AP2/ERF domain
SMARTSM003803.1E-835112IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-961106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-1369106IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.3E-40175299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-31182278IPR015300DNA-binding pseudobarrel domain
CDDcd100177.20E-29182286No hitNo description
SMARTSM010197.1E-23184293IPR003340B3 DNA binding domain
PfamPF023621.8E-28184285IPR003340B3 DNA binding domain
PROSITE profilePS5086313.733184289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MVSKGDILNH DARHPPNRRG HITPTSPRTY PSILHFRNVF VQRQESFRAQ LSSGAHARNG  60
QRELPRGRYR RRRVWLGTFA GEGDAARAYD VAVQRFRGRD AVTNFRPLAD ADPDAAAELR  120
FLASRSKAEV VDMLRKHTYF DELAQNRRAF ASAPTTSSSL AANNHDSSSS SPSPASAAAR  180
EHLFDKTVTP SDVGKLNRLV IPKQHAEKHF PLELPSAGGE SKGVLLNFED AEGKVWRFRY  240
SYWNSSQSYV LTKGWSRFVK EKGLNAGDVV GFYRTAAGAD TKLFIECKLR PKNGAAVSVA  300
ANPVINVPSS APVTKTVRLF GVDLLTAPAP EAAMGTGCKR ARDFAATPTQ AAFKKPLVEL  360
ALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-511782942117B3 domain-containing transcription factor NGA1
5os9_B1e-511782942117B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02430.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278700.0KJ727870.1 Zea mays clone pUT5962 AP2-EREBP transcription factor (EREB126) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398137.11e-149AP2/ERF and B3 domain-containing protein Os01g0693400 isoform X2
SwissprotQ8RZX91e-140Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A1D6G2Q71e-142A0A1D6G2Q7_MAIZE; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A3L6DRN21e-142A0A3L6DRN2_MAIZE; AP2/ERF and B3 domain-containing protein
STRINGPavir.Eb02845.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-81related to ABI3/VP1 2