PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02445.1.g00050.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 554aa MW: 60996.5 Da PI: 4.0382

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02445.1.g00050.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	59.1	1.2e-18	17	86	2	71
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearard 71 CaaC+ +rrkC++dCv+ p f e+ ++f +v ++FGa+ v+ +l++l ++er +a++ lv +A +r+ Zpz_sc02445.1.g00050.1.sm.mk 17 CAACRQMRRKCVPDCVFVPFFGPEDGERFYAVDRIFGAHYVSDMLEDLAPHERWNAVEMLVHQATLGMRN 86 ****************************************************************987776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.453	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-18	17	88	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MSSSSAAPET EPQSQDCAAC RQMRRKCVPD CVFVPFFGPE DGERFYAVDR IFGAHYVSDM 60 LEDLAPHERW NAVEMLVHQA TLGMRNQQMA EVQQPQRADG RVYGNQQTVP QVAGSQNSAA 120 VDQDQLRMKM MAQVRRNAAA ARKAFFPQLA QLQQMRVAAE VAEVAMNPDM MMWQATAAPT 180 QQMYQSEAQQ LPASTLGGAT QRDMMMQQAT AAAAVQNYPY SVQQYPEMGL EQQHQQNQQM 240 AQAANLATAA EAAMDQEMLE YLMMPAPSPA AAAATEQSNY QLGHQQLPEP EKEHALELPA 300 ADEFGWDEDL MTRQFTEAVA TAGVTTDEYL MMTTTMVELQ DVAGGQQNGH DHTELYANMG 360 QGHQLGQQLP DPETEHALEV PAADEFRWDE DLMTRQMVEA AATAGVTADE YLMMTATMVE 420 LQDVAGGQQN GHDHAEQYAN MGHGHQLGQQ LPDPESTEQA LELPAADEFG WDEDLMTRQM 480 AEAAATAGVT ADEYLMMTTT TLELMDVPGG QQYGHDHAER YANMGRGNTD LQRNGGGAEV 540 QSPDVAAYFT NDDM

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MSSSSAAPET EPQSQDCAAC RQMRRKCVPD CVFVPFFGPE DGERFYAVDR IFGAHYVSDM  60
LEDLAPHERW NAVEMLVHQA TLGMRNQQMA EVQQPQRADG RVYGNQQTVP QVAGSQNSAA  120
VDQDQLRMKM MAQVRRNAAA ARKAFFPQLA QLQQMRVAAE VAEVAMNPDM MMWQATAAPT  180
QQMYQSEAQQ LPASTLGGAT QRDMMMQQAT AAAAVQNYPY SVQQYPEMGL EQQHQQNQQM  240
AQAANLATAA EAAMDQEMLE YLMMPAPSPA AAAATEQSNY QLGHQQLPEP EKEHALELPA  300
ADEFGWDEDL MTRQFTEAVA TAGVTTDEYL MMTTTMVELQ DVAGGQQNGH DHTELYANMG  360
QGHQLGQQLP DPETEHALEV PAADEFRWDE DLMTRQMVEA AATAGVTADE YLMMTATMVE  420
LQDVAGGQQN GHDHAEQYAN MGHGHQLGQQ LPDPESTEQA LELPAADEFG WDEDLMTRQM  480
AEAAATAGVT ADEYLMMTTT TLELMDVPGG QQYGHDHAER YANMGRGNTD LQRNGGGAEV  540
QSPDVAAYFT NDDM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-16	6	80	1	75	LOB family transfactor Ramosa2.1
5ly0_B	1e-16	6	80	1	75	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02445.1.g00050.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36282	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-19	LBD family protein