PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02446.1.g00150.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 251aa MW: 28059.1 Da PI: 11.5056

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02446.1.g00150.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.9	9.6e-05	218	242	5	29
HHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 5 hnerErrRRdriNsafeeLrellPk 29 h +rEr+RR+++ ++++ L l+ Zpz_sc02446.1.g00150.1.am.mk 218 HMMRERQRREKLSQSYADLYALVAA 242 889****************998866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.47E-5	207	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MRSRKRKTQR VVVRDFSTGP PTRNLRPGPS HSLIRRVRHL TPSLQARTSS VRHRQRLPFP 60 HPQHQHRCLF KPASERLRGD KPLVTPRPPL HGCLLAERRR SPGEMQVGMD SYYAGFGFND 120 EIPCFYPHGA APASPELPFG FDAVSPFVEP PGAPVLQAGS EVRGYGGAAG PEVITGGAPQ 180 MEMMDAMGAM RADRDQCQTR GEGRRQPGTV ESSRGFRHMM RERQRREKLS QSYADLYALV 240 AARSKVSLLT R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	7	SRKRKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02446.1.g00150.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365903	2e-34	AK365903.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038M22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022678746.1	2e-30	transcription factor BHLH148-like isoform X2
TrEMBL	A0A368SEV0	1e-29	A0A368SEV0_SETIT; Uncharacterized protein
STRING	Si036716m	1e-29	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50