PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02464.1.g00020.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 637aa MW: 70200 Da PI: 6.8363

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02464.1.g00020.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	53.1	9.1e-17	11	81	2	72
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardP 72 C aC+++rrkC++dCv+ap+f ++ ++fa++ + FGas v++ l++ ++ er +a++ lv A a + P Zpz_sc02464.1.g00020.1.sm.mk 11 CVACRHMRRKCEPDCVFAPHFGPDDGERFAALDRAFGASFVSQQLADREPRERAAAIEMLVRIAIASVPRP 81 9********************************************************99998887776666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.668	9	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-15	11	81	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence Send to blast
MASSEEAEKV CVACRHMRRK CEPDCVFAPH FGPDDGERFA ALDRAFGASF VSQQLADREP 60 RERAAAIEML VRIAIASVPR PAGVKAQQEA AAAQISREQV LIRQYHTGTG FGVPAYQSAE 120 YQAMIASHQE MLMRNAGAVY QPLELEELLQ GAAAKQKSTL QPVAELQQQR TAAEEVARHH 180 DMVMRQAAAA QNYQALGLEQ QREGAAAKQK SILQPVAELQ QQRTAADVVA RYHDMVMRQA 240 AAAVQNYQAL SLEQQREGAA AKQKSMLQPV AELQQQRTAA DEVARYHDMM MRQAAAAAAV 300 QNYQALGLEQ QRESAAAKQK SMLQPVAGLQ QERTAADEVA RHHAMMMRQA AAAQNYLGIE 360 QQREGAAAKQ KSMLQPVAEL QQQRTAAEEV ARHHDKMMLQ AAAAQNYQAL GLEQQHQNRQ 420 LAEGVMHQTE LTAEAAERAT AEEAAGVREV DRVLQSLRQA AVEEQYMNNY LRAVMLETVA 480 DGQQQQHPLH SDQAGQNAAM LQQKLEQGIV NTQKIDQQIA IAQQHWEKKL TMMQQAAANA 540 PAMRGEQPQP QRQTRNAQFQ KESSLPPLPT QPRHAGGASG ARTMSFLPGR SADSEAFLVQ 600 PSLPSLPPSL ADTPRQQQND GGNKDLSVDP TLRLWNH

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence Send to blast

MASSEEAEKV CVACRHMRRK CEPDCVFAPH FGPDDGERFA ALDRAFGASF VSQQLADREP  60
RERAAAIEML VRIAIASVPR PAGVKAQQEA AAAQISREQV LIRQYHTGTG FGVPAYQSAE  120
YQAMIASHQE MLMRNAGAVY QPLELEELLQ GAAAKQKSTL QPVAELQQQR TAAEEVARHH  180
DMVMRQAAAA QNYQALGLEQ QREGAAAKQK SILQPVAELQ QQRTAADVVA RYHDMVMRQA  240
AAAVQNYQAL SLEQQREGAA AKQKSMLQPV AELQQQRTAA DEVARYHDMM MRQAAAAAAV  300
QNYQALGLEQ QRESAAAKQK SMLQPVAGLQ QERTAADEVA RHHAMMMRQA AAAQNYLGIE  360
QQREGAAAKQ KSMLQPVAEL QQQRTAAEEV ARHHDKMMLQ AAAAQNYQAL GLEQQHQNRQ  420
LAEGVMHQTE LTAEAAERAT AEEAAGVREV DRVLQSLRQA AVEEQYMNNY LRAVMLETVA  480
DGQQQQHPLH SDQAGQNAAM LQQKLEQGIV NTQKIDQQIA IAQQHWEKKL TMMQQAAANA  540
PAMRGEQPQP QRQTRNAQFQ KESSLPPLPT QPRHAGGASG ARTMSFLPGR SADSEAFLVQ  600
PSLPSLPPSL ADTPRQQQND GGNKDLSVDP TLRLWNH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02464.1.g00020.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36265	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	4e-15	LBD family protein