PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02465.1.g00130.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 434aa    MW: 47514.7 Da    PI: 10.1523
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02465.1.g00130.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.37.7e-331873281128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                                   lp+G++F+Ptd+el+ e+L+ k++ ++      +   +    +i+   +i++++P++Lp  v+++    +fF++ +k+y+t
  Zpz_sc02465.1.g00130.1.am.mk 187 LPAGVKFDPTDQELL-EHLEGKARPESrklhplV---DefipTIEGEdGICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTT 262
                                   799************.99****999985665442...133334666646**********.555666688************ PP

                           NAM  71 gkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   g+rk+r+++       + +W++tgk+++vl+ +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Zpz_sc02465.1.g00130.1.am.mk 263 GTRKRRKVHsededggETRWHKTGKTRPVLA-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 328
                                   ******8444555544778************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-37178347IPR003441NAC domain
PROSITE profilePS5100532.884187347IPR003441NAC domain
PfamPF023651.3E-14188328IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MTSPQKLSAS AIDRYSCSAA TLSTSPSPAG RTWLAHGLRG PRAISKVDDG RRIRTPALVS  60
FSRIRKTLRS MAPCECEASG REDQATCHRL PTAARSLCVP SRTTPQRDRK ARLHISSPSA  120
KRSIDRMTWC NGFNDVRAAV DNPAGVVAAA GKKGAASLAV LVKMCPSCGH RAQFAQETTT  180
IQDLPGLPAG VKFDPTDQEL LEHLEGKARP ESRKLHPLVD EFIPTIEGED GICYTHPEKL  240
PGVSKDGLVR HFFHRPSKAY TTGTRKRRKV HSEDEDGGET RWHKTGKTRP VLANGRPRGY  300
KKILVLYTNY GKQRKPEKTN WVMHQYHLGS DEEERDGELV ISKVFFQTQP RQCGSTAAAA  360
AAKDPIGDST KNNPAVNGRE LAGHTVFSEP NVAEYYNPAT IGYGHGVPNN RAQVVATHFM  420
PNFAVHAGRA SFAP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02465.1.g00130.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0655440.0BT065544.2 Zea mays full-length cDNA clone ZM_BFb0229C22 mRNA, complete cds.
GenBankJX4285320.0JX428532.1 Zea mays subsp. mays clone pUT3132 NAC87 NAC type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440245.11e-155NAC domain-containing protein 73
SwissprotO494591e-122NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A109PNR31e-168A0A109PNR3_BAMEM; NAC1
STRINGPavir.J04559.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-118NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]