PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02477.1.g00050.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 191aa    MW: 20234.6 Da    PI: 5.7449
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02477.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.5e-117298127
                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                    ++++ C +++rtG C++G +C+F+H+p
  Zpz_sc02477.1.g00050.1.sm.mkhc 72 PGEPDCTYYLRTGLCRFGMSCRFNHPP 98
                                    5789*********************97 PP
2zf-CCCH43.64.8e-14124149227
                                     -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                     ++elC+f++r+G+Ck+G++CkF H++
  Zpz_sc02477.1.g00050.1.sm.mkhc 124 GEELCKFYSRYGICKFGANCKFDHPM 149
                                     78**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.9717199IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-57198IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-87398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-67699IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-47797IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5122149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.662123150IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-11124149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6125150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-6126147IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MENAGRTSAP AAVTVSASAS AAPAPPPPSA TTTAAADTSS SDPSALYEEA MWQQMAMDSG  60
TTMQPGPYPE RPGEPDCTYY LRTGLCRFGM SCRFNHPPDR NLAIASARMK GEYPERVGQP  120
ECQGEELCKF YSRYGICKFG ANCKFDHPMA TTPMGVYAYG FNASTSPASA STNVPTVQRL  180
LGSPSPSGYT S
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02477.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370353e-92BT037035.1 Zea mays full-length cDNA clone ZM_BFb0152E14 mRNA, complete cds.
GenBankEU9653993e-92EU965399.1 Zea mays clone 285780 zinc finger CCCH type domain-containing protein ZFN-like 2 mRNA, complete cds.
GenBankJX4284673e-92JX428467.1 Zea mays subsp. mays clone pUT3062 C3H49 C3H type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971057.11e-74zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB52e-58C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLK3XI363e-73K3XI36_SETIT; Uncharacterized protein
STRINGSi001558m5e-74(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17256611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-42zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]