PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02487.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 238aa    MW: 25944.7 Da    PI: 4.1619
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02487.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57340.48.4e-13152238395
                        DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 
                                   fqr ws++De+ +L  l   + ++g+ p++ d++a      +  ++++  +ql+ K+++L+  + + vkk   g+    sk
  Zpz_sc02487.1.g00010.1.am.mk 152 FQRSWSKDDEVRILETLAAHRREHGTLPHHkDLEAALA--GSLDNSDYRGNQLLGKVKSLRSVYSRTVKK---GEL--PSK 225
                                   9************************9776657777543..3344689**********************9...544..579 PP

                        DUF573  83 ehdqkifelskki 95 
                                   +hd+ if+lsk +
  Zpz_sc02487.1.g00010.1.am.mk 226 DHDRRIFNLSKEV 238
                                   9*********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.8E-17152238IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAPKRPAPPP PPVESSEETD SGSGSEESEE EIALSPPTAT APKNTVRPPP QPEASDESSS  60
EEEDESGEED EEEEEEALKS NYTVPPTANP NPPPPPPTQE ESESDEEGEE SESEEEANDD  120
APQKESASKL AAEANGEKLP PSSGDNKRGG FFQRSWSKDD EVRILETLAA HRREHGTLPH  180
HKDLEAALAG SLDNSDYRGN QLLGKVKSLR SVYSRTVKKG ELPSKDHDRR IFNLSKEV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02487.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456145.24e-33nucleolin
TrEMBLA0A3L6QKU32e-42A0A3L6QKU3_PANMI; Uncharacterized protein
STRINGPavir.Aa00346.1.p2e-41(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.13e-08DNA-binding storekeeper protein-related transcriptional regulator