PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02492.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 310aa    MW: 34422.6 Da    PI: 11.4637
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02492.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer84.51.1e-26222275357
                   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                                   +vrY eC++NhAa +GghavDGC+Ef+++ ge+gt  al+CaACgCHR+FHRr v
  Zpz_sc02492.1.g00030.1.am.mk 222 GVRYGECRRNHAALTGGHAVDGCREFLAA-GEDGTGGALRCAACGCHRSFHRRVV 275
                                   79**************************9.999********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-26223274IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-16223271IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.3E-22224273IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.046225274IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQPPLRRQKS RFLADAIGHL KFGGSGDFPA VSSARFTAGL RRAGRRDIPL SGRRILEWPD  60
GEERPPCPVL RPHGISRAQR RPRQVLHVTL ARIETPRVVL LSFRAPVIGA SLYFFSYAHT  120
LPFGRHLSKQ WRKSIQQWRR QGRRNRDLLG TDGIMPSTHE LPDEEPASWG RRPASCPLRR  180
RARLAPPPSR HRAKEVAIMK RLVMVRRCHA PPPPGLGECC GGVRYGECRR NHAALTGGHA  240
VDGCREFLAA GEDGTGGALR CAACGCHRSF HRRVVRRCCC CSCRDDTDAA ADAARWDCSP  300
EVAASRATGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02492.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1079042e-44AK107904.1 Oryza sativa Japonica Group cDNA clone:002-134-F11, full insert sequence.
GenBankAP0051592e-44AP005159.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11.
GenBankAP0149642e-44AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-44CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankCT8314432e-44CT831443.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA034C07, full insert sequence.
GenBankCT8314442e-44CT831444.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA001I02, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4705122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74660.13e-22mini zinc finger 1