PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02539.1.g00020.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 174aa MW: 19316.8 Da PI: 10.5771

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02539.1.g00020.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.2	2.7e-13	117	165	1	50
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktek 50 +fY++YA+++GF+vrk++ +k+ ++ge+ +++fvC+keg+++ +k+ ++ Zpz_sc02539.1.g00020.1.sm.mk 117 EFYKNYAQKLGFTVRKRYANKNMKTGEVNSSRFVCYKEGFKAMDKRV-NH 165 6****************************************999876.33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-10	117	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MWTNWVSGPS ARRPGSAVPV CAVPHRSQPL HERPHSLLTR GILAQSRPRN SQPVLMCSQA 60 PRSQSVPPPP AAQSPMAGDT NAVHIEAVRS IGSSQTVHGD YTPRLGQEFV SNEEAYEFYK 120 NYAQKLGFTV RKRYANKNMK TGEVNSSRFV CYKEGFKAMD KRVNHSKTPQ PNGL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02539.1.g00020.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952692.1	1e-30	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1E5WJK0	1e-31	A0A1E5WJK0_9POAL; Uncharacterized protein (Fragment)
STRING	Si016539m	5e-30	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17298	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-10	FAR1-related sequence 10