PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02539.1.g00100.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 439aa MW: 46671.7 Da PI: 8.4026

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02539.1.g00100.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.1	5e-11	214	260	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +h Er RR+r+++ f+eL+ llP + +K +Ka+i +A+ +Ik L Zpz_sc02539.1.g00100.1.am.mk 214 SHIFTERERRKRMRNMFAELKVLLPDvP-----EKADKATIIGEAISFIKVL 260 67889*******************77.....9*************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-13	207	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.15E-10	208	261	No hit	No description
PROSITE profile	PS50888	13.814	210	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-13	212	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-8	214	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-8	216	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MDLVGLGHDG WSRESLERHG RRRPEKQSRL TELDDAPAHA HCGGAAASSR TRKLRCRSSG 60 SAPALLLARG GDVELAAASR TTTVHRSVDG EQNLRLRETV TSEETDGRRA RNVAACSRQG 120 TDASSDHGSA PPAPGVTVTA LSPGENSNSG PCAGVPVVAE EDAGKGKDVV VEHGSAGSGH 180 SDARVLPKGK RSAAEALARE FEDAASGRKK LMSSHIFTER ERRKRMRNMF AELKVLLPDV 240 PEKADKATII GEAISFIKVL EGNVTNLQKR KQDLVLARLA AAAVVNHVAA TSAPPPPGTP 300 LAAAASSDDL PRGWAWLPKQ QEQKPAASPV GFQSWCGTNV VLSVSKDDAL ISVSALNHPG 360 LLVLLMSVLL KHRLDVLTAH VESDGDRRLY SFHARVILTF GSSCDQVNAE AVRMLGGEPP 420 ASEDIYKLAV SEIIIWLST

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MDLVGLGHDG WSRESLERHG RRRPEKQSRL TELDDAPAHA HCGGAAASSR TRKLRCRSSG  60
SAPALLLARG GDVELAAASR TTTVHRSVDG EQNLRLRETV TSEETDGRRA RNVAACSRQG  120
TDASSDHGSA PPAPGVTVTA LSPGENSNSG PCAGVPVVAE EDAGKGKDVV VEHGSAGSGH  180
SDARVLPKGK RSAAEALARE FEDAASGRKK LMSSHIFTER ERRKRMRNMF AELKVLLPDV  240
PEKADKATII GEAISFIKVL EGNVTNLQKR KQDLVLARLA AAAVVNHVAA TSAPPPPGTP  300
LAAAASSDDL PRGWAWLPKQ QEQKPAASPV GFQSWCGTNV VLSVSKDDAL ISVSALNHPG  360
LLVLLMSVLL KHRLDVLTAH VESDGDRRLY SFHARVILTF GSSCDQVNAE AVRMLGGEPP  420
ASEDIYKLAV SEIIIWLST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	26	GRRRPEKQ
2	207	224	RKKLMSSHIFTERERRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02539.1.g00100.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	3e-21	bHLH family protein