PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02539.1.g00110.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 405aa MW: 43019.6 Da PI: 8.9663

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02539.1.g00110.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.6e-13	97	147	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 h ++Er RR+r+ f+eL llP++ k + + +K++i+++A++YI+sL+ Zpz_sc02539.1.g00110.1.am.mk 97 HYMVERERRRRMTGMFAELNALLPNSNK-KVRAyTDKVTIVTEAINYIRSLE 147 889********************633.33446**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.306	92	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.2E-10	97	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-13	97	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-13	97	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-9	98	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.13E-4	105	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MAQDGHHAGH QGAVDASDGH GTPAPAVTSP RESSNQGTWR RVRAVAADDV DNRKDVVDLA 60 PVKVERADVR VTDDDVTKGK GKAPADADGA GNEVPPHYMV ERERRRRMTG MFAELNALLP 120 NSNKKVRAYT DKVTIVTEAI NYIRSLEDTY QKLEKRRREL ALARQASQPD HGAGSSSAPP 180 PYDAGQATGL SPVLSLDLAG SSSVPPPDAG WLSMGLSPVL PLGRAGSSSV PPPGTFLGTG 240 RSSFLPLGRA GSSSVPPPGT FLGTGQSSVL PLGRADSSSV LLPPAFLGWS WLPKRRKPEA 300 GEVAVPQPIG FQTYSEANVG LNLMGDDAFI TTCVPKRPGV LLLVLTILEK HHIDVISGHI 360 LSDVNRSKFT LYTRVSSYIL INLSSSILVS WFPAFGLTFG CSSSY

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MAQDGHHAGH QGAVDASDGH GTPAPAVTSP RESSNQGTWR RVRAVAADDV DNRKDVVDLA  60
PVKVERADVR VTDDDVTKGK GKAPADADGA GNEVPPHYMV ERERRRRMTG MFAELNALLP  120
NSNKKVRAYT DKVTIVTEAI NYIRSLEDTY QKLEKRRREL ALARQASQPD HGAGSSSAPP  180
PYDAGQATGL SPVLSLDLAG SSSVPPPDAG WLSMGLSPVL PLGRAGSSSV PPPGTFLGTG  240
RSSFLPLGRA GSSSVPPPGT FLGTGQSSVL PLGRADSSSV LLPPAFLGWS WLPKRRKPEA  300
GEVAVPQPIG FQTYSEANVG LNLMGDDAFI TTCVPKRPGV LLLVLTILEK HHIDVISGHI  360
LSDVNRSKFT LYTRVSSYIL INLSSSILVS WFPAFGLTFG CSSSY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02539.1.g00110.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP28209	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	1e-08	bHLH family protein